RNA id: TU32061


Basic Information

Item Value
RNA id TU32061
length 3129
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G21586
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 19928729 ~ 19951931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttTGTACATTTAGTTAGTTTTATTGTACACGGGGAATGTTCACATATACAATTTGTAcacattttcaattatattatttgtattattatcattattacttcAGTGTTTCCTCCAAAgggaaaacatgtttttgttttgtttatattgtgCTGACAAGTCAAGTTACGTTTaggcaaataaaacaaagaaacaaatgaaaggTTCGGGAAATAAGcgcaaaaaattacaaaacacatGAAGCGGAATAACATCAAATTAAAGGGCAGAATCAGTTGGTCACTAATCGTCCTCTTTCAGTTTGCTAATACAGTTTTCTGATTGATTCCCTACGATCATATACTGAATGTCCTCTAAATGGACGCACATGATAAAATCTGCGCATGCTGAGAATGCAACCCATCGACTTCTCAGAATTTCGGCACTTACACCTTGCAATTCGCCTGgcattttctgtgtttgtgcgtgttGATATGTTATATTTGGACTCACGGCATCAGCATCAGCAGTAACAAAGTAATGGGATCAGTTGTCACGTATACCTTTCGGATGAAAGTGTctgcaaatgcataaatgtaaatgtaacgtGTAAAGGACTATGCATTTGCCTGGCAGTAATATCAGTAAACCTTCAGTGTGTAGATTGTAAATAGATTCATCCACAGATTTATTGaatgcgtgtgcatgtgtgtaagcTTGTGAAAACGTGTATACGTGAATAACGTAGCACATGGATGAAAACACGCTTGTGCACTGACCCAGTGATGAGGATGTAAGTCGTTTAAACTCGCACACATTCAGTCTATttgaataatgacagaattttcggTTTTGgtgactgtccctttaaggatTTTGTGTATAAGTGCACAAacttatgatcaaataaatatctTCACGTCCATAGATTTGCTTGAACCCCTTTACCATTTAAAGCACTGGATAAAACAAAAGGAACTGAGCACAATATGAAAacttacacatacacactcaccatgagcacacacacacacacacacacacacacagaatctcATACACTGTATACTCTTACACCACAACCATCAATACCGCTGTGTCAATTTAAGTGCATTACAGTGATTTTGGCAGGAAGCCtaaaatactgaatatataatTCACAGAGCACCACTGTATTCTCAATCTGAAACACAAAGGACTTCGCAtccacacacgcacaaacacacactgcagtgTGCCTGTTTATAGAACAATCATCACATAATCTGATCATCAGTTTGGAAACTCATTTGCTCTGTTGCTTATTCACACGctcacacattcactcactcactgtcTATTTAACTCTGTATTGATCTTAACCCTTTTAACTCTTAGATATAGACTCTTTCTTCTCACTATgtgagctctctctctccctctccgccatataaataattatttgtccCGACTGGTTGAACATATTCTTCTGTTTTATCCCAATCTGATACCCATCCAGCCCCAGCACCTCCTCCGTTCGGGCCACCAGCGTGGGGATTGTTTATAGCTCCGTACTGTCCTCCAGTCCTGTACAGCTCTTCCGTTTCATTGGCCAGTTCGTCCTCTCCCAGAATGCCACACTTCTCCTCGCTGGTATTCTCAGCATCCGCCCAGGGCTGCTTCTCACCTGATGCAAAGATCCCTAAAAGATCACACCCCCATAATGCACCAGTGAGGCAATGAGGAAGACGTACTGCCACTCTTCACGTGTCTACaagcaaaaatacataaataaagcGACGATACAAACCGGTTACCAGAAATCAGTTATTTGACATGTGATGGTTGTGTGCTATTAGTATGTACCTTATGTTTGGTCATGGCTCCAACTATGAGAGGACACACCATTCCTGACAAAGTTCCCACTCCATTGGAGATTCCCATCAGGATGCTAGCATAACGTGGAGCAATGTCAAGATGATTCACATTGAACCCTGAAAAGGAAAGAGGAACGCAATGTTCATACATGCATCTTAAAGTATCTAAAGCATCTTGCCTAAACCGCAGCTTTAATTcacactttatttcttttaatgtgactttacattttgtaattgtgactttatgcCTCACAATGTTCCACGattcatatttcacaatgtcactattatttttgattttattcatgttttatccGTATTTTCATCACATGAGTGCAGCCTTGACgaacataattaaaaacatgaaaatcttATAGAGGCAAGACTCAATGCTGGTAGTGAACACTGTGAAGTGAATTCTTAAGTGTGTTTTGTCTTTAATCTTTTCTTTTACAAACCTGAAATTGCAAATCCACTGAAACCAACCGCCAGTACAAGGAAAGAAATGGCTATTACTTTGGTATGTGAGAAACCAACAACCAAGAGTAGCGTGGCCTCCATCCCAaaccctaaaacacacacagacacacacaaccTTACAGTCTCTCGGATTCAACATACAAGGTTTCCTGAGGGTCGGAGTATACCTGTGCATGCTCTGATGCATCTGTCTCGGTGTTGTGCATGCGTGTATGTTGTGTGTGCAGATGACTGCCAGAGACTGAGTGTGTCATGCATTGATGCGTCAGTGATTATTGCCCCAGCTGCCATTGCAGGACCAGACAAAGCAAAAATAGGCAGATAATCTGACTCGCGTCTcacacaaatatacagtttCTGACTCTGCACATGCTCTGTTGATTAAAACGCACGTTGTGTGCTGGATTCTACGTTTacgacatttatttattaatttttctttccttcttatCTACATCTTACCTCCACAGTTCATGAGTTTACGGACATTCGTTGTGGTCATTATATTGTGTGTTCTCAGGTAGTCGGCGAGTTGTCCTCCAATTGGCACGATAATGGTCATCACTAAATGAGGAAGTGCCGAACACCTCCTCGAAGTAAGCGGGCTGGCTGATGAGGAGCAGGTAGAAGGTCCAGCTTCTGCAGAAGTTGGCCACGATGATGGCATACACTGGCATGGAGGTAAAGAAGTGCCGCCAGGGAGTTTTAAATTTCTGCAGGGTAGCGAAAAAAACAGAGGTCGAACATATCCAGAACAGTGCAGCACGCAGCAGTTAGAGAGATGAGAAACGAGAGAAGAGTTAGAGTATGTGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32016 lncRNA upstream 37398 19903586 ~ 19910683 (+) True G21554
TU32018 lncRNA upstream 42428 19881382 ~ 19905653 (+) False G21554
TU32021 lncRNA upstream 71760 19873439 ~ 19876321 (+) True G21555
TU32026 lncRNA downstream 2442 19954076 ~ 19970419 (+) True G21558
TU32079 lncRNA downstream 113326 20064960 ~ 20065876 (+) False LOC122341338
XR_006250469.1 lncRNA downstream 208802 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 208802 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 217002 20168636 ~ 20173002 (+) True G21652
XM_043233554.1 mRNA upstream 6501 19930733 ~ 19941580 (+) True pold1
XM_043233601.1 mRNA upstream 26810 19917670 ~ 19921271 (+) False aspdh
XM_043233600.1 mRNA upstream 26810 19918206 ~ 19921271 (+) False aspdh
XM_043233599.1 mRNA upstream 26810 19918209 ~ 19921271 (+) True aspdh
XM_043229689.1 mRNA upstream 436574 19509088 ~ 19511507 (+) True nkiras2
XM_043234687.1 mRNA downstream 35872 19987506 ~ 19998472 (+) True LOC122341334
XM_043234688.1 mRNA downstream 46859 19998493 ~ 19999588 (+) True LOC122341335
XM_043234998.1 mRNA downstream 58499 20010133 ~ 20021740 (+) True LOC122341548
XM_043234689.1 mRNA downstream 112636 20064270 ~ 20069253 (+) True LOC122341338
XM_043234690.1 mRNA downstream 120310 20071944 ~ 20077001 (+) True LOC122341339
TU31603 other upstream 544905 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 544905 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 544905 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 655740 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 954884 18991458 ~ 18993197 (+) False G21202
TU32077 other downstream 112856 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other downstream 114496 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 155212 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 233933 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 235894 20187528 ~ 20188083 (+) False eftud2

Expression Profile