RNA id: TU32078


Basic Information

Item Value
RNA id TU32078
length 860
RNA type TUCP
GC content 0.48
exon number 6
gene id LOC122341338
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20064270 ~ 20069253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cagcaccccaaaatgaataaaatgcaagtATTGGATTTAACTCAGCAAATATGACGCAGGGTGGTGTAGTATTATATTTCATGGAAAAGGAGTATTTTGCAAAGGTAAGGCTTTAACTAATAAAGATCGGTAAGTTGACTCCATTGTGTGTTTATCAGCTCTCAACTTAGCGAGACAGTGCCTCAATACACACCTGTCTTTCTGGATGGCTGGCAGCCAATGGCCACAGATCCTCACGGACAGCCCTTCGAGGACCCCATAGAGTCCCAGCACAGACATGAAGCCCTCATGCAGACTCAACAGGTCATTGATCAGGCGCGTCTAGCTGTATACCAGGAACACGACGGGATGGAAGACTCCCTGCCTCCTCACGAAGAAAGGCTGTACCGTTGCAGTTATGACTTTGTGGCGAGAAACAGTAGTGAACTCTCAGTATTACATGGAGAAACCCTGGAGGTGTTAGAGTCATCAAAGAGATGGTGGAAATGTAAGAATGAATACGACCAAATTGGTTTCGTTCCACATAATATTCTCGAGCCAATCAATCACGCAGAAGTCGACTCTTCCAACGTAGTAATGCGCAACCAGTCTATGAAAGCTCCTATTCCTCCCCCGGGAGGAGGCAGAGCCTCGTGTGTTCTGCCCAATTCCACAGGCAAAAATGCTTTCCACCCTGATCCACGCCCCCACAGTATGCCACCAATTGGAGACGACGGAGATAaagtatttttgatgaatgatGAGCTCTTGCAACGACTGGCCAATGGTAAATCAGCATCGATACGCCCAGTGGTAATTAACAAAGCAAATGAGACCACCGCCCCGCTGGACTATCACTCCCCTCCAGCTGAGGTTCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32079 lncRNA upstream 254 20064960 ~ 20065876 (+) False LOC122341338
TU32026 lncRNA upstream 95711 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 114199 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 114496 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 155447 19903586 ~ 19910683 (+) True G21554
XR_006250469.1 lncRNA downstream 92435 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 92435 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 100635 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 105693 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 162014 20230015 ~ 20314144 (+) False G21655
XM_043234998.1 mRNA upstream 44390 20010133 ~ 20021740 (+) True LOC122341548
XM_043234688.1 mRNA upstream 66542 19998493 ~ 19999588 (+) True LOC122341335
XM_043234687.1 mRNA upstream 67658 19987506 ~ 19998472 (+) True LOC122341334
XM_043233554.1 mRNA upstream 124550 19930733 ~ 19941580 (+) True pold1
XM_043233599.1 mRNA upstream 144859 19918209 ~ 19921271 (+) True aspdh
XM_043234690.1 mRNA downstream 3943 20071944 ~ 20077001 (+) True LOC122341339
XM_043234691.1 mRNA downstream 9001 20077002 ~ 20082045 (+) True LOC122341340
XM_043234997.1 mRNA downstream 26850 20094851 ~ 20113498 (+) True LOC122341546
XM_043234692.1 mRNA downstream 80513 20148514 ~ 20160181 (+) True LOC122341342
XM_043235916.1 mRNA downstream 117534 20185535 ~ 20195721 (+) True eftud2
TU31603 other upstream 662954 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 662954 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 662954 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 773789 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 1072933 18991458 ~ 18993197 (+) False G21202
TU32169 other downstream 38845 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 117566 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 119527 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 246259 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1227701 21295702 ~ 21414286 (+) True G22087

Expression Profile