RNA id: TU32079


Basic Information

Item Value
RNA id TU32079
length 492
lncRNA type sense_over
GC content 0.43
exon number 4
gene id LOC122341338
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20064270 ~ 20069253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAACTGGACTTATTGCTTAAaagcttacttttttttatatcccaCTCTTGTAGGAGTTGGTGAATCACTGTTTTGCTGATGTGGAGCATTTTATGGCCCGTCTGCAGGAGACAGCAGAAGCTAAGAACATTGTAGAGCAACAGatcattaaaaacagcaaagaagGATGATAAGaaaagcaagaagaagaaaaaacagtttGACGGCCCTCTCATACGAACGGTGATCCCACCATCAGAACAAGAGTTTGTGGATGTTCTTCAGAAGATTAAATATTCTTTCTGTCTACTGGATCGCCTGAAGACGAAAATCTCAGAACCAACCTCAGAACAACTCTTACACCATGTATTCATCCCATTGCAACTGATGGTAAAGACCACAGGTGGTCCTGAGTTGGCAGCAACAGTGTCCAGCCCCGCTATGACCAGTGGAGCAATCTCCCTACTACAGAAGAACCTTAATGAGCATGAGAAACCACTGTGGAAGTCACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32026 lncRNA upstream 94541 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 113029 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 113326 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 154277 19903586 ~ 19910683 (+) True G21554
TU32018 lncRNA upstream 159307 19881382 ~ 19905653 (+) False G21554
XR_006250469.1 lncRNA downstream 94560 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 94560 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 102760 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 107818 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 164139 20230015 ~ 20314144 (+) False G21655
XM_043234998.1 mRNA upstream 43220 20010133 ~ 20021740 (+) True LOC122341548
XM_043234688.1 mRNA upstream 65372 19998493 ~ 19999588 (+) True LOC122341335
XM_043234687.1 mRNA upstream 66488 19987506 ~ 19998472 (+) True LOC122341334
XM_043233554.1 mRNA upstream 123380 19930733 ~ 19941580 (+) True pold1
XM_043233601.1 mRNA upstream 143689 19917670 ~ 19921271 (+) False aspdh
XM_043234690.1 mRNA downstream 6068 20071944 ~ 20077001 (+) True LOC122341339
XM_043234691.1 mRNA downstream 11126 20077002 ~ 20082045 (+) True LOC122341340
XM_043234997.1 mRNA downstream 28975 20094851 ~ 20113498 (+) True LOC122341546
XM_043234692.1 mRNA downstream 82638 20148514 ~ 20160181 (+) True LOC122341342
XM_043235916.1 mRNA downstream 119659 20185535 ~ 20195721 (+) True eftud2
TU31603 other upstream 661784 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 661784 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 661784 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 772619 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 1071763 18991458 ~ 18993197 (+) False G21202
TU32078 other downstream 254 20066130 ~ 20068001 (+) False LOC122341338
TU32169 other downstream 40970 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 119691 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 121652 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 248384 20314260 ~ 20314331 (+) True trnac-gca_3

Expression Profile