RNA id: XM_043234689.1


Basic Information

Item Value
RNA id XM_043234689.1
length 1705
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC122341338
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20064270 ~ 20069253 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATGTATTGTAAATGGAGAGACAGAGTGAAAACAGATTCACATCTGATGCATGCACAGAGAGAAGTTGAGTTGGTGAATCACTGTTTTGCTGATGTGGAGCATTTTATGGCCCGTCTGCAGGAGACAGCAGAAGCTAAGAACATTGTAGAGCACAGatcattaaaaacagcaaagaagGATGATAAGaaaagcaagaagaagaaaaaacagtttGACGGCCCTCTCATACGAACGGTGATCCCACCATCAGAACAAGAGTTTGTGGATGTTCTTCAGAAGATTAAATATTCTTTCTGTCTACTGGATCGCCTGAAGACGAAAATCTCAGAACCAACCTCAGAACAACTCTTACACCATGTATTCATCCCATTGCAACTGATGGTAAAGACCACAGGTGGTCCTGAGTTGGCAGCAACAGTGTCCAGCCCCGCTATGACCAGTGGAGCAATCTCCCTACTACAGAAGAACCTTAATGAGCATGAGAAACCACTGTGGAAGTCACTCAGCCCAATGACCATGCCATACTCTCAACTTAGCGAGACAGTGCCTCAATACACACCTGTCTTTCTGGATGGCTGGCAGCCAATGGCCACAGATCCTCACGGACAGCCCTTCGAGGACCCCATAGAGTCCCAGCACAGACATGAAGCCCTCATGCAGACTCAACAGGTCATTGATCAGGCGCGTCTAGCTGTATACCAGGAACACGACGGGATGGAAGACTCCCTGCCTCCTCACGAAGAAAGGCTGTACCGTTGCAGTTATGACTTTGTGGCGAGAAACAGTAGTGAACTCTCAGTATTACATGGAGAAACCCTGGAGGTGTTAGAGTCATCAAAGAGATGGTGGAAATGTAAGAATGAATACGACCAAATTGGTTTCGTTCCACATAATATTCTCGAGCCAATCAATCACGCAGAAGTCGACTCTTCCAACGTAGTAATGCGCAACCAGTCTATGAAAGCTCCTATTCCTCCCCCGGGAGGAGGCAGAGCCTCGTGTGTTCTGCCCAATTCCACAGGCAAAAATGCTTTCCACCCTGATCCACGCCCCCACAGTATGCCACCAATTGGAGACGACGGAGATAaagtatttttgatgaatgatGAGCTCTTGCAACGACTGGCCAATGGTAAATCAGCATCGATACGCCCAGTGGTAATTAACAAAGCAAATGAGACCACCGCCCCGCTGGACTATCACTCCCCTCCAGCTGAGGTTCAGGGGTGGCTCAGTGCCAAAGGCTTCCATGATTACACTGTACAGAGTCTCGGTGTCCTAACGGGAGCCCAGCTCTTCTCTCTGAATAAGGATGAGCTGCGTGCCGTTTGTCCAGAAGAGGGAACCAGAGTCTACAGTCAGATCATGGTGCAGAAAGCACTGCTGGAGGATAAGAGGAAGGCCACTGAGTTGGAGGCCAtaatgaagaaacagaagatgaAAGTTGATCTGAAAGCAGAGGGTGGAGAATTTTAACGGATATCACTTTCACTCACACATTCAGACAAGCATTTATGCTAAAGCTTTAACAGACAGGTGTGGCATGAATTAAGATCTATTTAACCAtaatatttgcttgttttatgtCATTGCTAATAAATATGGATCATTACCACTCATCATTTGGAAATCAAACCTGTATATTCCTTTATGTATTCtattttaactataaataaaataaaataaaatactgcttgtatttata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32026 lncRNA upstream 93851 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 112339 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 112636 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 153587 19903586 ~ 19910683 (+) True G21554
TU32018 lncRNA upstream 158617 19881382 ~ 19905653 (+) False G21554
XR_006250469.1 lncRNA downstream 91183 20160436 ~ 20161211 (+) True LOC122341550
TU32162 lncRNA downstream 91183 20160436 ~ 20161205 (+) False LOC122341550
TU32179 lncRNA downstream 99383 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 104441 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 160762 20230015 ~ 20314144 (+) False G21655
XM_043234998.1 mRNA upstream 42530 20010133 ~ 20021740 (+) True LOC122341548
XM_043234688.1 mRNA upstream 64682 19998493 ~ 19999588 (+) True LOC122341335
XM_043234687.1 mRNA upstream 65798 19987506 ~ 19998472 (+) True LOC122341334
XM_043233554.1 mRNA upstream 122690 19930733 ~ 19941580 (+) True pold1
XM_043233600.1 mRNA upstream 142999 19918206 ~ 19921271 (+) False aspdh
XM_043234690.1 mRNA downstream 2691 20071944 ~ 20077001 (+) True LOC122341339
XM_043234691.1 mRNA downstream 7749 20077002 ~ 20082045 (+) True LOC122341340
XM_043234997.1 mRNA downstream 25598 20094851 ~ 20113498 (+) True LOC122341546
XM_043234692.1 mRNA downstream 79261 20148514 ~ 20160181 (+) True LOC122341342
XM_043235916.1 mRNA downstream 116282 20185535 ~ 20195721 (+) True eftud2
TU31603 other upstream 661094 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 661094 19399871 ~ 19403176 (+) False ypel3
TU31600 other upstream 661094 19399871 ~ 19403176 (+) False ypel3
TU31536 other upstream 771929 19291445 ~ 19292341 (+) True G21213
TU31520 other upstream 1071073 18991458 ~ 18993197 (+) False G21202
TU32169 other downstream 37593 20106846 ~ 20107836 (+) False LOC122341546
TU32173 other downstream 116314 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 118275 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 245007 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1226449 21295702 ~ 21414286 (+) True G22087

Expression Profile