RNA id: XR_006250469.1


Basic Information

Item Value
RNA id XR_006250469.1
length 590
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id LOC122341550
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20160436 ~ 20161211 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtattttaaagaaCTAAACTCTGAGCTGGTTGCTTCAGAAGTCAAAACTCAAAGTGACTTAAATAAACTAAGGATGGCGCCAGCAAGACAACACAGTTTAAAATACGATCTGATGAAATCCAGGAGCAACCCAGACTTCCCAAAGGACCATGCTACTCTTACGCAGACCGTCAGATCCAAGAGTCTTAAAGATGGACTCACAGTTCAGGAGAGGATGAAGCTTTTTGAATTAACCAGCACGCAAAAGAtttgactctgtgtgtgtgcgtctgtgtgatagagagagagaaagataagcattttaaagtattacgtgggttaaattatttaattgtatatctTTATAACACAATGAATTCTAACTATACCTTTAgtcactggtgtgtgtgtgtgtgaccgagagagagcgagcctatgtcagtcattttaattgtttgttattgctttaGATGGTAGAATTAATTTTTGATATGACGTTGTCTCTCTAAATCTTAAActgtctttgtttatatttacatgtttatgcCCGAATGAGCATCCATTCAATTTGCTTCATCTCTAATTATGAATAAAGTCAAGCTTTTCCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32079 lncRNA upstream 94560 20064960 ~ 20065876 (+) False LOC122341338
TU32026 lncRNA upstream 190017 19954076 ~ 19970419 (+) True G21558
TU32062 lncRNA upstream 208505 19928729 ~ 19951931 (+) False G21586
TU32061 lncRNA upstream 208802 19948081 ~ 19951634 (+) True G21586
TU32016 lncRNA upstream 249753 19903586 ~ 19910683 (+) True G21554
TU32179 lncRNA downstream 7425 20168636 ~ 20173002 (+) True G21652
XR_006250526.1 lncRNA downstream 12483 20173694 ~ 20185526 (+) True LOC122342124
TU32185 lncRNA downstream 68804 20230015 ~ 20314144 (+) False G21655
TU32184 lncRNA downstream 152084 20313295 ~ 20314144 (+) True G21655
TU32192 lncRNA downstream 178680 20339891 ~ 20345356 (+) True G21660
XM_043234692.1 mRNA upstream 255 20148514 ~ 20160181 (+) True LOC122341342
XM_043234997.1 mRNA upstream 46938 20094851 ~ 20113498 (+) True LOC122341546
XM_043234691.1 mRNA upstream 78391 20077002 ~ 20082045 (+) True LOC122341340
XM_043234690.1 mRNA upstream 83435 20071944 ~ 20077001 (+) True LOC122341339
XM_043234689.1 mRNA upstream 91183 20064270 ~ 20069253 (+) True LOC122341338
XM_043235916.1 mRNA downstream 24324 20185535 ~ 20195721 (+) True eftud2
XM_043225769.1 mRNA downstream 40065 20201276 ~ 20229670 (+) False gjc1
XM_043225734.1 mRNA downstream 40922 20202133 ~ 20229670 (+) True gjc1
XM_043225743.1 mRNA downstream 40922 20202133 ~ 20229670 (+) False gjc1
XM_043225728.1 mRNA downstream 40922 20202133 ~ 20229670 (+) False gjc1
TU32169 other upstream 52600 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 92435 20064490 ~ 20068001 (+) False LOC122341338
TU32078 other upstream 92435 20066130 ~ 20068001 (+) False LOC122341338
TU31603 other upstream 757260 19399832 ~ 19403176 (+) False ypel3
TU31597 other upstream 757260 19399871 ~ 19403176 (+) False ypel3
TU32173 other downstream 24356 20185567 ~ 20187198 (+) False eftud2
TU32181 other downstream 26317 20187528 ~ 20188083 (+) False eftud2
unassigned_transcript_291 other downstream 153049 20314260 ~ 20314331 (+) True trnac-gca_3
TU32806 other downstream 1134491 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1476532 21637743 ~ 21734127 (+) False crhr1

Expression Profile