RNA id: TU32192


Basic Information

Item Value
RNA id TU32192
length 1881
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G21660
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20339891 ~ 20345356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTCCTGCACGGGTGTGTCGGTGCGAGAGGAGCAGTTGCTGCGCACCACGCTGCAGTTAGTGGCACAGCCAACGATGGTGATCCCCGCCAGCATGCCCTCCACTCCACCCTTCTCCTCTGAAGCCCCGTCTCCAGCCTGCTGCTCCAGAAATATCTCACCCGCTGGGTAATCACTCTCACTGGCCGCTGTGGTATCTTGAGCACTGTCCGCCTGCGAGCCGTTCTGTAGGAGATCACAGTTAGAGCCACGGCGACACTGTCACCACGGCAACCCTGACAAACACACTGACACCGTGGCAACCCTAATACTAAGAATACGGATGGACGATGTGGTACTGAACGGCTTAAACCAATTGAAAGGTTATTAAAcctcaaaatgaacattttggcattaatcacttactcccatgtcgttccaaacatgTAAAGGCTTTGTTCGTCTTCGGGGACAcagagaatactttttgtacacaaagaaaacaaaaataatgactttattacaCAAGGATAGTTTCTATGTGTATTTAGgctttgttttgaatgaaaacagcacATCCGTGTGTCACATCTTTCATACTCTTTTCACAAAAccttcatccaaaatatattaagaatGTATGTTTTCGAAGCTGAACTGACCTTTtctgggtttggaacgacatgagggtaagtgacttatgaaaaaaaaaaaaatcattttgatgcggagtaaccatttaataatatttaaaagctgttaCACAAAACactatattattgtattttaaggtcttcagctttacagaaaaacaagcaaagacAGTTTTCTGCctaatttatgtaaataaacaatttactGATAAAATTAACAATCTGATAAAATTAagtcatgtaaataaataattcactgataaaatgaacacattttgttttttctttttagaaaaatgtacgattttatatttaagtgtgtcattattttattttaatttttttctcaattttatttctaattatccgttattttctttcattaaatgtttaaattaacaaaaaacttttaatacttttagtACAATTAATAACACTATAACTGACTCATTATTCTTGTGAAATATTATGTGaaaatcacaatattttttactttttctagATTTATAAGTTCCAATTAAGTTCTTGTTAATAATTTCACTACAGTATATAGTTTTGATGGTAGATGGAAGCTCTTACTGCAGACTTTATCTGTATATCTTATGAATACCGGATACtgttacatacttttttttagtatCTTGTAGGGTAGCTAATTcattttcttaacttttttttcccactaaACTGTTCTTGCACATCTTTAACGAGCAATTCATTACCTCACATCAACTCGGATGCCTTTGCTTATTTTGGGAGGAGCTTAACTAAGACTTGCATCCGGGTCTAttgttatttgatttttttctcttggaTTTGATTTCCTGACAAAACAGAGCCACTTGACTCTCAATGTTGAGATAAACTGCTTAGCGAGATCAGGGGTCAAGGGTCAAGATAAGAGCAGATACCTGTTTCAGTCGGGACGGGACACTCCAGCCACAGGTCTGCATGGGGCCGTCCTTCCGGCGCATGTGCTCACGCACCTGCCGGTACTGCTCTCGACGCTGCTCTCTGCGAGTACAGAGCGCAGAATCGCTGAGGAGAGACGCAACACCGTTACTGGGCAGTCTCTCACTCTTCAGGCATGAACTCCAGTATGCAGCTGGAGGTGGAGATCTGACACATGGTCTGTGAGCGTCTCTGATTGTAGCCGGCAGGAGAGGGAGACTTGTAGTGAATGTTGACACTGGTGTACGGCCGTTTCACCGGAGGAGGGCTCGCCGATGAGCTAAAGAGACGTGCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32185 lncRNA upstream 25747 20230015 ~ 20314144 (+) False G21655
TU32184 lncRNA upstream 25747 20313295 ~ 20314144 (+) True G21655
XR_006250526.1 lncRNA upstream 154365 20173694 ~ 20185526 (+) True LOC122342124
TU32179 lncRNA upstream 166889 20168636 ~ 20173002 (+) True G21652
XR_006250469.1 lncRNA upstream 178680 20160436 ~ 20161211 (+) True LOC122341550
TU32202 lncRNA downstream 48205 20393561 ~ 20393901 (+) True G21669
TU32204 lncRNA downstream 62436 20407792 ~ 20408327 (+) True G21671
TU32232 lncRNA downstream 134975 20480331 ~ 20518038 (+) True G21687
XR_006249635.1 lncRNA downstream 375217 20720573 ~ 20726559 (+) True LOC122337901
TU32293 lncRNA downstream 378102 20723458 ~ 20724700 (+) True G21732
XM_043229013.1 mRNA upstream 5841 20331334 ~ 20334050 (+) False nme3
XM_043229006.1 mRNA upstream 5841 20331943 ~ 20334050 (+) True nme3
XM_043225682.1 mRNA upstream 8661 20328156 ~ 20331230 (+) True mrps34
XM_043235622.1 mRNA upstream 12339 20321945 ~ 20327552 (+) True spsb3a
XM_043235443.1 mRNA upstream 19601 20316318 ~ 20320290 (+) True atp6v0ca
XM_043235294.1 mRNA downstream 22089 20367445 ~ 20382139 (+) False cramp1
XM_043235296.1 mRNA downstream 22109 20367465 ~ 20382139 (+) False cramp1
XM_043235293.1 mRNA downstream 22249 20367605 ~ 20382139 (+) True cramp1
XM_043235295.1 mRNA downstream 23919 20369275 ~ 20382139 (+) False cramp1
XM_043235297.1 mRNA downstream 36916 20382272 ~ 20386834 (+) True dhrs7b
unassigned_transcript_291 other upstream 25560 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 151808 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 152693 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 232055 20106846 ~ 20107836 (+) False LOC122341546
TU32077 other upstream 271890 20064490 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 950346 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 1292387 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1629896 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1631153 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 2183633 22528989 ~ 22530060 (+) True G22344

Expression Profile