RNA id: TU32293


Basic Information

Item Value
RNA id TU32293
length 1221
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G21732
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20723458 ~ 20724700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGCAAGTCCTTGCCAGGATTATCTGTatctttttgaaaatgtaaggaACTGATGTCATACACCAATCGCTCTTcacgcaaacaaagccaaaacctagatattttaggcaatatagaatTCCTGGCCAGGACGCATTCGGGAAAAATAGCTCTTATGGTCACCCTAGAAAAATGTGCTTATATAGTGAAAGTCacatgtttaaaatgacatgaaggtgataaaataatgacataatttaaatatttaggctaGCTATGTGTGACCCAGAAAACTCCAACTTCCCACGTTAACTTCAGAAATTCTGCCTCGCAAAAGTATACCACGTCTATCCTTAGACAGCATTTGCGTTGGTGTTCCACTATAGTGTGAATAAAGTCTTTGTAATGTCACGGAGCATGACTGATGGTGCTGTCACACATGTAAAGGAGTGAACAGCAGAAGTCACAGATGTCTTTGTTCTGCTAACACTAATGCTAATCATAGCTAAAGCTGGGGAAAGATTCTCAGAACTCCGGAATTCCAGGGATTTAGTTCCACGCAAATGAGCTTGCTGCAGATCTGTGATCTCTAGagaagttttgtttaaaaaccaaaaaaccaaacaaaaagaaGTGTCTTTCCAGTAAAGGTAAAGTAAAGCCATCcacacaaaaaaatccaaacccttttttttattatttttttgtatctgcTTTACACAGTTTGTGACACTTAGGTCAGCTAAGCAATACcacaatgataaaaataaaagcaaacttgAAGTTAATAAATAGAACTGCTCTGTATAATGTATTCACACATCTGTACAATCCCATTGGCCATATATGGGACAATATGTCTCTCTTTTTTGGGGTACAtctcttcattttctctgtctctctctctctctctctctctctctcacacacacacacacacacacacacacacacacactgtgactATGTGCATTAGTCTACATGATGGTGCAGCTCTTGGCTCTGTCCTCCCTGAGGGTAGGGGTGGGTTCAAGGGGCGTGGCCTGTGAGCTGACTGGCAGTAGAGGCTGATTAGATATGCGCTTGAGAGTGCGGCGCGAGGAGCTTCTCTTGAGGCTCGGGATGGCCTCACGTCTGACGGACACCAGCGTGGTGATGTGAAAGACGTCCCGGACGCTGTTCACGCACATTCGGGACGAACACTCCACATATGCAACTGCGCCCAGCTCGCGTGCTCGTGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32232 lncRNA upstream 205420 20480331 ~ 20518038 (+) True G21687
TU32204 lncRNA upstream 315131 20407792 ~ 20408327 (+) True G21671
TU32202 lncRNA upstream 329557 20393561 ~ 20393901 (+) True G21669
TU32192 lncRNA upstream 378102 20339891 ~ 20345356 (+) True G21660
TU32294 lncRNA downstream 13277 20737977 ~ 20738225 (+) True G21733
TU32300 lncRNA downstream 45957 20770657 ~ 20770881 (+) True G21739
TU32301 lncRNA downstream 46424 20771124 ~ 20771524 (+) True G21740
TU32280 lncRNA downstream 46984 20771684 ~ 20903541 (+) True G21722
TU32278 lncRNA downstream 98575 20823275 ~ 20903541 (+) False G21722
XM_043233749.1 mRNA upstream 12412 20686238 ~ 20711046 (+) True mrc2
XM_043233750.1 mRNA upstream 12412 20686239 ~ 20711046 (+) False mrc2
XM_043233758.1 mRNA upstream 39972 20666904 ~ 20683486 (+) True tlk2
XM_043233776.1 mRNA upstream 57132 20661639 ~ 20666326 (+) True mettl2a
XM_043233755.1 mRNA upstream 64915 20649949 ~ 20658543 (+) True itgb3a
XM_043233766.1 mRNA downstream 19088 20743788 ~ 20767599 (+) True vat1
XM_043233768.1 mRNA downstream 55515 20780215 ~ 20784388 (+) True asb16
XM_043233782.1 mRNA downstream 59833 20784533 ~ 20789004 (+) True tmub2
XM_043233783.1 mRNA downstream 59849 20784549 ~ 20789004 (+) False tmub2
XM_043233778.1 mRNA downstream 198797 20923497 ~ 20955984 (+) True LOC122337427
unassigned_transcript_291 other upstream 409127 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 535375 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 536260 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 615622 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 655457 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 571002 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 913043 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1250552 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1251809 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1804289 22528989 ~ 22530060 (+) True G22344

Expression Profile