RNA id: TU32294


Basic Information

Item Value
RNA id TU32294
length 249
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G21733
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20737977 ~ 20738225 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTTTTAACGATGTGATTTAACGCATCACCGAGTCGCTCGTTCGGGGTTCCCAAGGTCACGAAAAACATCAAGAAAATATCATTCGATTAAAAGCCACGCGCTCGGAACATTAGCGcgatttaataaaatgtcaaaaagccACAACCGCTACAGAGATCGCGTCCGTGCTAACTCCGTTCGCTGGTTTTGAATTCATAGTTTACATCAAAAAGatatttatgtttctaaatattAGTTATTGAGTTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006249635.1 lncRNA upstream 11418 20720573 ~ 20726559 (+) True LOC122337901
TU32293 lncRNA upstream 13277 20723458 ~ 20724700 (+) True G21732
TU32232 lncRNA upstream 219939 20480331 ~ 20518038 (+) True G21687
TU32204 lncRNA upstream 329650 20407792 ~ 20408327 (+) True G21671
TU32202 lncRNA upstream 344076 20393561 ~ 20393901 (+) True G21669
TU32300 lncRNA downstream 32432 20770657 ~ 20770881 (+) True G21739
TU32301 lncRNA downstream 32899 20771124 ~ 20771524 (+) True G21740
TU32280 lncRNA downstream 33459 20771684 ~ 20903541 (+) True G21722
TU32278 lncRNA downstream 85050 20823275 ~ 20903541 (+) False G21722
TU32272 lncRNA downstream 88637 20826862 ~ 20907982 (+) True G21719
XM_043233749.1 mRNA upstream 26931 20686238 ~ 20711046 (+) True mrc2
XM_043233750.1 mRNA upstream 26931 20686239 ~ 20711046 (+) False mrc2
XM_043233758.1 mRNA upstream 54491 20666904 ~ 20683486 (+) True tlk2
XM_043233776.1 mRNA upstream 71651 20661639 ~ 20666326 (+) True mettl2a
XM_043233755.1 mRNA upstream 79434 20649949 ~ 20658543 (+) True itgb3a
XM_043233766.1 mRNA downstream 5563 20743788 ~ 20767599 (+) True vat1
XM_043233768.1 mRNA downstream 41990 20780215 ~ 20784388 (+) True asb16
XM_043233782.1 mRNA downstream 46308 20784533 ~ 20789004 (+) True tmub2
XM_043233783.1 mRNA downstream 46324 20784549 ~ 20789004 (+) False tmub2
XM_043233778.1 mRNA downstream 185272 20923497 ~ 20955984 (+) True LOC122337427
unassigned_transcript_291 other upstream 423646 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 549894 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 550779 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 630141 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 669976 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 557477 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 899518 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1237027 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1238284 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1790764 22528989 ~ 22530060 (+) True G22344