RNA id: TU32300


Basic Information

Item Value
RNA id TU32300
length 225
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G21739
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 20770657 ~ 20770881 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTGGGGGTCGGCTCTCCGCTGGCTGGGTGTTGAGTAGAAATGCAGGCAAAATAACAtccctctgtctgtctctctctctgtctgtctgtctatagtcttgcctaagcacaaatattaatgctttaagCCGATTCATGCAAATATTTCAGTGAAATTTCATGAGGTACATAAGTTTCTCACGATGAGAGCTCAACAGTTGCCCGGTTGGATTTTGTCATGTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32294 lncRNA upstream 32432 20737977 ~ 20738225 (+) True G21733
XR_006249635.1 lncRNA upstream 44098 20720573 ~ 20726559 (+) True LOC122337901
TU32293 lncRNA upstream 45957 20723458 ~ 20724700 (+) True G21732
TU32232 lncRNA upstream 252619 20480331 ~ 20518038 (+) True G21687
TU32204 lncRNA upstream 362330 20407792 ~ 20408327 (+) True G21671
TU32301 lncRNA downstream 243 20771124 ~ 20771524 (+) True G21740
TU32280 lncRNA downstream 803 20771684 ~ 20903541 (+) True G21722
TU32278 lncRNA downstream 52394 20823275 ~ 20903541 (+) False G21722
TU32272 lncRNA downstream 55981 20826862 ~ 20907982 (+) True G21719
TU32328 lncRNA downstream 111317 20882198 ~ 20956574 (+) False LOC122337427
XM_043233766.1 mRNA upstream 3058 20743788 ~ 20767599 (+) True vat1
XM_043233749.1 mRNA upstream 59611 20686238 ~ 20711046 (+) True mrc2
XM_043233750.1 mRNA upstream 59611 20686239 ~ 20711046 (+) False mrc2
XM_043233758.1 mRNA upstream 87171 20666904 ~ 20683486 (+) True tlk2
XM_043233776.1 mRNA upstream 104331 20661639 ~ 20666326 (+) True mettl2a
XM_043233768.1 mRNA downstream 9334 20780215 ~ 20784388 (+) True asb16
XM_043233782.1 mRNA downstream 13652 20784533 ~ 20789004 (+) True tmub2
XM_043233783.1 mRNA downstream 13668 20784549 ~ 20789004 (+) False tmub2
XM_043233778.1 mRNA downstream 152616 20923497 ~ 20955984 (+) True LOC122337427
XM_043233790.1 mRNA downstream 259743 21030624 ~ 21058249 (+) True LOC122337590
unassigned_transcript_291 other upstream 456326 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 582574 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 583459 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 662821 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 702656 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 524821 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 866862 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 1204371 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 1205628 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1758108 22528989 ~ 22530060 (+) True G22344

Expression Profile