RNA id: TU32735


Basic Information

Item Value
RNA id TU32735
length 226
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G22034
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21099498 ~ 21099723 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTACACGATTTGTTCCGCCGGgactctgttttattttatattattcaccGTAGTCTAATCATAAAGTACCTGCAGTCAGACGGCGGCGTTTTAATACACTTACAGCACAACAGAGAGCTGCAATCACAACGTCACAGTAAATTGGATTAGAAAGTTAgcggacagacagagagagtcCTTCAACAAGGTCttcgttttctttttgaaattcGTCATGCTTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32734 lncRNA upstream 4667 21093666 ~ 21094831 (+) True G22033
TU32330 lncRNA upstream 142172 20956662 ~ 20957326 (+) True G21761
TU32328 lncRNA upstream 142924 20882198 ~ 20956574 (+) False LOC122337427
TU32272 lncRNA upstream 191516 20826862 ~ 20907982 (+) True G21719
TU32280 lncRNA upstream 195957 20771684 ~ 20903541 (+) True G21722
TU32736 lncRNA downstream 1484 21101207 ~ 21101601 (+) True G22035
TU32748 lncRNA downstream 41342 21141065 ~ 21213616 (+) True G22044
TU32753 lncRNA downstream 147881 21247604 ~ 21343269 (+) True G22046
XR_006249626.1 lncRNA downstream 148387 21248110 ~ 21251430 (+) True LOC122337868
XR_006249646.1 lncRNA downstream 154023 21253746 ~ 21268971 (+) True LOC122337912
XM_043233790.1 mRNA upstream 41249 21030624 ~ 21058249 (+) True LOC122337590
XM_043233778.1 mRNA upstream 143514 20923497 ~ 20955984 (+) True LOC122337427
XM_043233782.1 mRNA upstream 310494 20784533 ~ 20789004 (+) True tmub2
XM_043233783.1 mRNA upstream 310494 20784549 ~ 20789004 (+) False tmub2
XM_043233768.1 mRNA upstream 315110 20780215 ~ 20784388 (+) True asb16
XM_043233801.1 mRNA downstream 145269 21244992 ~ 21246808 (+) True zwi
XM_043234696.1 mRNA downstream 216550 21316273 ~ 21329556 (+) True LOC122341346
XM_043233794.1 mRNA downstream 230605 21330328 ~ 21340480 (+) False LOC122337639
XM_043233793.1 mRNA downstream 230608 21330331 ~ 21343248 (+) True LOC122337639
XM_043234697.1 mRNA downstream 254644 21354367 ~ 21363114 (+) True LOC122341347
unassigned_transcript_291 other upstream 785167 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 911415 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 912300 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 991662 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 1031497 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 195979 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 538020 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 875529 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 876786 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1429266 22528989 ~ 22530060 (+) True G22344

Expression Profile