RNA id: TU32753


Basic Information

Item Value
RNA id TU32753
length 2478
lncRNA type read_through
GC content 0.40
exon number 4
gene id G22046
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21247604 ~ 21343269 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCGACACTAGCTGTTTGGACTGTCACACCCAGCCAGACACCGTCTGTGTGCATTGGGATGCGTTGCTGCCAGGGCACGCGATGAGCCATCATCACCTCATCATCATCCTGTAGAATCAGGAGAGCAGAAACTTCCCAAGGGAGAGTTGAGAAAATTTAACCCTGAACGGGCTCCAGGTCAAGCCACCTAGGCTGGCTGCTGGAGGAGACCTCCTGGAGCTTCTCCGGCACCACCACCTTCGGTTCCACCATGGGTAACACCAGTATCACAGAGGGCAAGACGGCCCTCAACCTGGGAAGCACATCGATCAAGAGAGACAAGACCAAGATCATGATGGGAAACTCTTCTATCTCCCGCGGGAAGAGCACAACATCCCTGGGTTCTTCCACCATCACCAGTGGCAAGACAAAGATCTCCATGGGTGCTGCTTCATTCAGCCGAGGAACCAAGACTACGTCCTTCCGAAAGGCTTTTATGCCCAAGAGGAAGACTCTTTAACGGGGACAGATTCACCAAGCTgggaacaaataaaacatagcAGCATATATCACCAACAGCTGAggaaacatcatcatcatcagagcATACCTTCTGTGGAGATAAgtcatgaatatttttttgccattcaaaacaaaaactttaccTGGACCaagtctcttttttgtttaccTAAGATTTCTCTGGAATACATCCTGGATACAGAGTTCTTGAATCATCGGAGTCCACACCTTTACATTACTAGCTTCAGCTGTCTGGAAAACTTTCTCAAGGAGATGAACAAAAACTGGCCATTCCATTACATTGGAAAGTCAAGATATGGGGACATCAACAAGAGCCTTTCTTTGACCGCTGGAACTCTTACCTCTCAACTTCGACCTGGGAGGCAGTCATCATGCCCTATTTTACACTGCATCATGTCGTGCCCTGATCTATGTGATCACCTTGCCCTTTATCAGTGATGATGTTACTGTTATTCACTGCTACAGATCTCATGGTTCAAAGCACTGAACTCTTGTTACATAGAAACAATGTTTGGAATACTCTTGTATCCAAAACAACTTTCAGTGCATTTGAGGTATCCCATTAGTAAAAACCCACCGACAAACgcgtaaacatatttttgagtgCCCTTACACTGAAACCTCTATTTGCCCCCCTCTGAAACTGACATTTGTTTAGTCTTTTTTGTTTGGAGTGTAAAAACTGAACAAGTAGAAAACTGAAACTGTGTAAACTTTGTGACTGTCTATAGCACGTCAGTGATCCAGAATGTATGTGTAACCATTGAAAAAAGCAGCAGAAATGCAACATCACTAACATTTCGATCTTAGCGCAGAACAAACTCAGCTTTGAGATAAGTGGGTAGGTTATGGGGAGTGAAAATAACCATGTTTCTGTTGGTCAAGACCCTTCTCCACAATGTCAACAGCTCTCAGTTTCAACAAAgatgctttcaaaaatatattgattagATTTGCTCCTGAATTTCGAGTTCAGATCATCTAAAATTCAAAGATGTTCCTGACCATTTCAACCTGGTTTAAAGGTCGCTGAAGACAGAACAAAAACTTTCACTGTGGACTGAGAGACATGACGATAGGAGTGAGGGTTTGATGATTGAGAGTGAAGGAAATAAGAGTATGGTCTCCTGATCTCAATGTACCAGACAAATACAGACACATGAGAGAAGCACGGGAGGTTTTAGCTATGTGTCTCTCAGAGCACCAAGTAATCTGAGCTAATCACGATCCAATTAAGCAGTGTTTGAGATTTCTTTGCTAGCAGCTATTAATTAAGATTCaaaaatctcatttttttttcttgtcaagTCCGTCGTGCTATGTAACTTgtcttttaatgtttcaaacaGCTCTGGCATGGCCATACAGGAGATGTGGGAAGTGGAGAAAGGCCTATGCCCTTTTCAACAAAAGCGTCTTTGTGTTTATAATAATCTGTGAGGTCTGAAGTCCATTTTTGTAATTCTTTCTCGTTCTTTTTTCCACACTGCATTAGCATAGCATGTGTTTCATGTGTTTAACAATTCCTACATTATGCCATCCAGATGGTAGAACCTTGGAAAGTTTGGTTCTAACCACGGTGCtgtatacttaataaatatgtgCTGACATTAATGAAGATCTATTTTCATgttgttctgaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaaaaaaaaaaaaaaaaaacacaaaaagctaCAATACAATCAATATGTTATATAGGTGATGTATCAGATGTgttcttatataatatatatgtgcagTTATGGAGCTGGGGAAAAAATTGTGTAAATTCTTTTGATGTGGTGATTGTCCATTAACTGAATCACTAGGTTAAAAAGGCTCAGTGTATTTTGTCCTGTCTTGTATGTTGCTTGTCTGGTAAGACGTCTCATAtagctgaaaataaaagaaattgacTGATGGACATAGTTGGCTATTCTTGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32748 lncRNA upstream 33988 21141065 ~ 21213616 (+) True G22044
TU32736 lncRNA upstream 146003 21101207 ~ 21101601 (+) True G22035
TU32735 lncRNA upstream 147881 21099498 ~ 21099723 (+) True G22034
TU32734 lncRNA upstream 152773 21093666 ~ 21094831 (+) True G22033
TU32330 lncRNA upstream 290278 20956662 ~ 20957326 (+) True G21761
TU32816 lncRNA downstream 1860 21345129 ~ 21493498 (+) True G22094
TU32803 lncRNA downstream 38539 21381808 ~ 21383124 (+) True G22084
TU32955 lncRNA downstream 292475 21635744 ~ 21636079 (+) True G22197
TU32956 lncRNA downstream 292854 21636123 ~ 21636570 (+) True G22198
TU32959 lncRNA downstream 390869 21734138 ~ 21734422 (+) True G22201
XM_043233801.1 mRNA upstream 796 21244992 ~ 21246808 (+) True zwi
XM_043233790.1 mRNA upstream 189355 21030624 ~ 21058249 (+) True LOC122337590
XM_043233778.1 mRNA upstream 291620 20923497 ~ 20955984 (+) True LOC122337427
XM_043233782.1 mRNA upstream 458600 20784533 ~ 20789004 (+) True tmub2
XM_043233783.1 mRNA upstream 458600 20784549 ~ 20789004 (+) False tmub2
XM_043234697.1 mRNA downstream 11098 21354367 ~ 21363114 (+) True LOC122341347
XM_043233759.1 mRNA downstream 20170 21363439 ~ 21366154 (+) True LOC122337169
XM_043233803.1 mRNA downstream 45878 21389147 ~ 21403118 (+) True LOC122337825
XM_043234698.1 mRNA downstream 86413 21429682 ~ 21437955 (+) True LOC122341349
XM_043233991.1 mRNA downstream 98653 21441922 ~ 21444741 (+) True LOC122340007
unassigned_transcript_291 other upstream 933273 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1059521 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1060406 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1139768 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 1179603 20066130 ~ 20068001 (+) False LOC122341338
XR_006248723.1 other downstream 294474 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 631983 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 633240 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1185720 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 1202889 22546158 ~ 22547208 (+) True G22329

Expression Profile