RNA id: TU32784


Basic Information

Item Value
RNA id TU32784
length 2488
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id LOC122337912
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21253746 ~ 21269492 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AACTAGGTAGCTTGAGCCTGACAGAACCTTTCAACACATCTCACTTTCCCTTCCCTTTATTTACCTGGACGAGACGATGACAGCATCCTTCTCGCTCCATTTGAGCCCAGGAGCATGTTTCAGGAATCGTTTGGACAGCAGGAAGAGGCCAGGGAAGAATATGGAGCCAGCTGCAAGGATGCTCAGCATAATCTCGGGCAATGTTGCTCAGCGTCACTGTGTGTCTAAAAAGGAGAAATAGCACACATTTAGgtgcatcttaaaaaaaaaaaatacacttttttttttaataatatgatgtacaaacaaaaacaaccttGCCATTCATGAAACCCATTCTTAagaataatgatttaaatagaCAGGCAATATTAGCGTTTTAATTCGTAGCTTGATCATAAGCATTACGTTCATAACTTGATTCTCACCAAAATCTGTTCActgaaaaaagaagagagaagggCAAGGCAAAGACAGAAGGATGAAACAAACGGGGAGAGTAAAGAAGGAAAATTAGACCACAAAATCCACATTGGCACTTGACACACAAGACATTCacctttttgaataaatgtgcatacatcaacaacaaacaaaaacccctCTTCCCCCAAGCCAAGTTCAAATCACAGTCTACAAGGTATGCATTTTGACAGCATGGCGCAGATAGATTCCCCGCATTTCTTCAGGAAGACAATTTCAGCTGCATCCCTTCACTTATCTCATTATTGCTTTGTAAGGAGTTCTTAAATTATTCCGGACAACTGCCATATTTATATTGAAGCAGAAGAAGCTGGGATGTTTGGGAGGAGGGATGGGGGAGTCCGTACTAAAATAGACACGGAAAGGATTAGCAAGCGAGAGATTTAGAAAGATTACTgcaggagggagagagaggggagcGAGACGAGGGGACactgagaagaaagaaagagggtgGAGGCCGCCATCCTGTGGTACAGTGAGGGTAACCTTGTGGGAGGAGGTGAAAGGGAGGGTATTGTTCCGGTTATATTTCTACCGTGGGACAGCGAGTGCGTGCGTGCAGCAAGCCAATCACAAAAGCAGCGTAAAACACTTCCATCCAAACCCGCAACACGCATCGCAGCGAAACCAAGGAGTGCGTTACAGGCGTGACAGCCGAGGCGCGTTAGTCATTCATTATGCTGCAGCTCGCGCGAATGAATCCGTTAATGCAGCACGCGAATAATTCAGGAGACCGGGCAGCGGCACGTTCTGTTACGAAAACCCACCACGGACGCGACGCTCACACGATCTCTAATCTCGCGCAAACGGTATTATAAAAAGCCTCCGCCGTTCCTCGCGCTCCGATTTTCTCCGTTTCGGGTAAACAACAGCAAAGCGGCGCGAGCGGCTCGCGCGTTCACAACGCTACCTTTAGAGCTAGCAGGCTAGCGGCATCCATCCTATTGTGTCGTCCTCGCCAGCAGAGAGCCCAGCAGCGGCGGAGGGAGTCTCTCCGGGACCTCTAGCTAACAGGTTGCGGGCGATAGGCCCgctggctgtgtgtgtgcgtgctgacGGCAGCCAGTGATGAACCGTTTTCCTCCCCACATGGCTGACGGAAAAAActgattgcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaataattcctcTAAAATGCAGatacaaagaagaagaaaaaaaaaaataaccatcaTAAAACAACTGTTCAATCATTTTATCAAAGCCATAATAGTCATTAACACCAATatcaagttttgaatttcttaaaaatgtctaaCATCTATCTTACGACTAAAAGAAATTCaccatttacttaaaatgttcaCTTTCCGCTTGGCAGCCGGTAAGACTGAACCAACCCACCGATCTTCATTCCTGTCACTATTTTGCTAGTTTTTCTATCAACACAATAGCAAAAGTGGtcataaaaacaacttaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaattaccaaaagcaaaaaaataaaattaaaatattggtCACGATACATGGGAGAAAAAGAGGTCCTATAGTAAAATTAAATAGCAACagcacatttataaatgtttctaaaataaaactaatgcaCTGCAATTGCAAATCCAAGTGAAGTccatacacacatgcattgaGAGACATTGATGATGAACAATAACTGCCTTGATACATCCAGTCGTGCCCTGGGCTTGTGTCGCCACCTGCTGGTAGGAGGCAAACGCTCACAGCACTGGGCCTCGTCGAGTATTCGGCTCTCTGCAATAAACCCAAAGAGTACCGACGACTGCCTGGACCCACGTCTACAGTGTCTACAGTCTAGTCCATATCATATAATATGAAACCTGAGCTCTAGACGTGCGTTACTTTTACAAATGAGTCGGGGAGGTTTTGGAGGTATTACACAAACAGCAGCATTTCCCCAACAACTATCTAATAATGAACCATAAGCCCCACTGTCCCGACAATCCgctctgagagaaaaaaaaaaacaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32780 lncRNA upstream 3369 21255144 ~ 21260229 (+) False LOC122337912
XR_006249626.1 lncRNA upstream 12168 21248110 ~ 21251430 (+) True LOC122337868
TU32748 lncRNA upstream 49982 21141065 ~ 21213616 (+) True G22044
TU32736 lncRNA upstream 161997 21101207 ~ 21101601 (+) True G22035
TU32735 lncRNA upstream 163875 21099498 ~ 21099723 (+) True G22034
TU32802 lncRNA downstream 20857 21290349 ~ 21291922 (+) True LOC122337857
XR_006249615.1 lncRNA downstream 20922 21290414 ~ 21291935 (+) False LOC122337857
TU32816 lncRNA downstream 75637 21345129 ~ 21493498 (+) True G22094
TU32803 lncRNA downstream 112316 21381808 ~ 21383124 (+) True G22084
TU32955 lncRNA downstream 366252 21635744 ~ 21636079 (+) True G22197
XM_043233801.1 mRNA upstream 16790 21244992 ~ 21246808 (+) True zwi
XM_043233790.1 mRNA upstream 205349 21030624 ~ 21058249 (+) True LOC122337590
XM_043233778.1 mRNA upstream 307614 20923497 ~ 20955984 (+) True LOC122337427
XM_043233782.1 mRNA upstream 474594 20784533 ~ 20789004 (+) True tmub2
XM_043234696.1 mRNA downstream 46781 21316273 ~ 21329556 (+) True LOC122341346
XM_043233794.1 mRNA downstream 60836 21330328 ~ 21340480 (+) False LOC122337639
XM_043233793.1 mRNA downstream 60839 21330331 ~ 21343248 (+) True LOC122337639
XM_043234697.1 mRNA downstream 84875 21354367 ~ 21363114 (+) True LOC122341347
XM_043233759.1 mRNA downstream 93947 21363439 ~ 21366154 (+) True LOC122337169
unassigned_transcript_291 other upstream 949267 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1075515 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1076400 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1155762 20106846 ~ 20107836 (+) False LOC122341546
TU32078 other upstream 1195597 20066130 ~ 20068001 (+) False LOC122341338
TU32806 other downstream 26210 21295702 ~ 21414286 (+) True G22087
XR_006248723.1 other downstream 368251 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 705760 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 707017 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 1259497 22528989 ~ 22530060 (+) True G22344

Expression Profile