RNA id: TU32956


Basic Information

Item Value
RNA id TU32956
length 448
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G22198
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 21636123 ~ 21636570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgacagaatagtcatttttgggtgaactatccattttaagtttgaaaaatacattttgtaaaagagctttttgttttaagaatatGTTTCCGTGAATGCTCTAAAATGCTGTAATGctaaagtacaaaaatgttaataacaaGTTGAATCGTCGACCGAACTGTGGACTCGTTGAGGTAAATGCCAATCGTTTCATTCTTTATAAAGCAACTGGATTAAAGTCAATTAAAGTAGTTATAAAGAAACTGGAATGAACAACCGCGTGTGATATGGAGAATGATTGAATGCAGCCAGTTGTTCTTTTCGACACCTTTGTCCGGGACTTTCTGTGCTCTTGTGACACCTGACCCTGAGAACGCATTTAAAATCCAGAAAGAGGACAGCGTCTGGAAACACATGCTCAGTGCTCAGTGCCACAAACAATACACAACTCAAAAGCTGAAACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU32955 lncRNA upstream 44 21635744 ~ 21636079 (+) True G22197
TU32816 lncRNA upstream 142625 21345129 ~ 21493498 (+) True G22094
TU32803 lncRNA upstream 252999 21381808 ~ 21383124 (+) True G22084
XR_006249615.1 lncRNA upstream 344188 21290414 ~ 21291935 (+) False LOC122337857
TU32802 lncRNA upstream 344201 21290349 ~ 21291922 (+) True LOC122337857
TU32959 lncRNA downstream 97568 21734138 ~ 21734422 (+) True G22201
TU33101 lncRNA downstream 341048 21977618 ~ 21979015 (+) False wnk4b
XR_006250495.1 lncRNA downstream 399312 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA downstream 399347 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA downstream 399347 22035917 ~ 22064100 (+) False LOC122341843
XM_043234699.1 mRNA upstream 185414 21447171 ~ 21450709 (+) True LOC122341350
XM_043233991.1 mRNA upstream 191382 21441922 ~ 21444741 (+) True LOC122340007
XM_043234698.1 mRNA upstream 198168 21429682 ~ 21437955 (+) True LOC122341349
XM_043233803.1 mRNA upstream 233005 21389147 ~ 21403118 (+) True LOC122337825
XM_043233759.1 mRNA upstream 269969 21363439 ~ 21366154 (+) True LOC122337169
XM_043232034.1 mRNA downstream 1173 21637743 ~ 21734127 (+) True crhr1
XM_043232045.1 mRNA downstream 44582 21681152 ~ 21734127 (+) False crhr1
XM_043232050.1 mRNA downstream 56846 21693416 ~ 21734127 (+) False crhr1
XM_043235446.1 mRNA downstream 146886 21783456 ~ 21795403 (+) True cdc27
XM_043235447.1 mRNA downstream 146886 21783456 ~ 21795403 (+) False cdc27
TU32806 other upstream 221837 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1321792 20314260 ~ 20314331 (+) True trnac-gca_3
TU32181 other upstream 1448040 20187528 ~ 20188083 (+) False eftud2
TU32173 other upstream 1448925 20185567 ~ 20187198 (+) False eftud2
TU32169 other upstream 1528287 20106846 ~ 20107836 (+) False LOC122341546
XR_006248723.1 other downstream 1173 21637743 ~ 21734127 (+) False crhr1
TU33098 other downstream 338682 21975252 ~ 21976665 (+) True G22301
XR_006248300.1 other downstream 339939 21976509 ~ 22025911 (+) False wnk4b
TU33161 other downstream 892419 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 909588 22546158 ~ 22547208 (+) True G22329

Expression Profile