RNA id: TU33106


Basic Information

Item Value
RNA id TU33106
length 418
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id LOC122341843
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22035882 ~ 22089931 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATATGATACCAGATCCGCGTCCCTACAGTAGATAGACACACTAGTCCTTAATTCTGCGGCTGCACTCTTGAATCACGGTGATCCCCTGATCACAAACCCTTTGCATTTGCTATGTGCTGACCGGTAGGCACGAAAACCAGGAGTTACTGTTTAACAGGAAAGGGAAGCCGAAGGACGAAGCGTTTACACTTGGCGAAGGTGTTCTTCATCTCCAGCGCTTCCCACTATACGGACACCAGAGCAAAAGAGCAGCGGATCCTCCTCATCCACACGACTGCATATCAACATAACGGAGCCGCTGAGGTTTAAATCTTAAGGAGATGGGACTTGGGCCTCTGCCCAAAGGAGAACGATTCCATCTCTGCCCCTATAGCTGTGACCGGTTTGCCGTGAGGCCCCGTACCCCCCTCTAATGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33101 lncRNA upstream 56902 21977618 ~ 21979015 (+) False wnk4b
TU32959 lncRNA upstream 301495 21734138 ~ 21734422 (+) True G22201
TU32956 lncRNA upstream 399347 21636123 ~ 21636570 (+) True G22198
TU32955 lncRNA upstream 399838 21635744 ~ 21636079 (+) True G22197
TU32803 lncRNA upstream 652793 21381808 ~ 21383124 (+) True G22084
TU33114 lncRNA downstream 205077 22269177 ~ 22287045 (+) False hdac5
TU33113 lncRNA downstream 224041 22288141 ~ 22336221 (+) False hdac5
TU33157 lncRNA downstream 447328 22511428 ~ 22640362 (+) True G22340
TU33156 lncRNA downstream 533918 22598018 ~ 22672911 (+) False G22340
TU33382 lncRNA downstream 659944 22724044 ~ 22725888 (+) False hoxb5a
XM_043229362.1 mRNA upstream 10006 21976509 ~ 22025911 (+) True wnk4b
XM_043229374.1 mRNA upstream 10006 21999808 ~ 22025911 (+) False wnk4b
XM_043229386.1 mRNA upstream 59551 21975235 ~ 21976366 (+) True LOC122331845
XM_043234001.1 mRNA upstream 61216 21951309 ~ 21974701 (+) False arhgap27l
XM_043233878.1 mRNA downstream 60790 22124890 ~ 22256992 (+) True tanc2a
XM_043233880.1 mRNA downstream 60790 22124890 ~ 22256992 (+) False tanc2a
XM_043233876.1 mRNA downstream 60790 22124890 ~ 22256992 (+) False tanc2a
XM_043233881.1 mRNA downstream 60790 22124890 ~ 22256992 (+) False tanc2a
XM_043233879.1 mRNA downstream 134186 22198286 ~ 22256992 (+) False tanc2a
XR_006248300.1 other upstream 10006 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 59252 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 301790 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 621631 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1721586 20314260 ~ 20314331 (+) True trnac-gca_3
TU33161 other downstream 464889 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 482058 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 841277 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 1094149 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 1339341 23403441 ~ 23408814 (+) True LOC122341907

Expression Profile