RNA id: XM_043233673.1


Basic Information

Item Value
RNA id XM_043233673.1
length 8074
RNA type mRNA
GC content 0.47
exon number 24
gene id hdac5
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22268986 ~ 22336227 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTCCAGTCTGTTTGTAAACTCCACGTCTCTATACCTCTGCTCTCCCGTTCGCCGCGCTCCGCGGGTGAGGGTGCAGAGATTCGGCTTTCAACAATTACATAAAAGCAACACAGTGGCACCAAACGGGTCGGACGGACGGTTCACTTTAAGCCCATTCATCGGGAGAGAGCCGAAGCAAAGGAAGAAACGGAGGGACCGGCAGGCGAAAGTCTCCCAGTCATCATCTCCCTCTCGTTCTGCGGCTTTCATTTCGTCCCGTCGCGTTTCGTCATGGGGAAGTCGCTCTTTCGGGGTCCGCCGACAGCACATGCGTGACTTCGGGATCCAGGGTGTTGGATACAAGCCTTGGACTTGTCGCCGTGAATTAGCAGTTTGTTTCTGACATCGACAATTAGACGAGAAGGTGATGTGGTTTATGAATAGACTCGTTTGTGCGGCTGTGAAGCTGACAGTTTGAGCGGACGATTTAAGGATTTGTCTGCAGCGTTTCTTTCCACGGATACCTGCATtggttgcttttatttttctattttaggaCCATGGAATTAACAGGCAAAGCGCTTGTCGATTTTTTGCACGCATGAACCTTTCGATAAAGCACGCgctgcttttttccccccctcctGCTTCAAATGCGTTCACTTTTTTAGACGGAGAGTGGGTTGGCATCTCCTTTTTcatgttcatttgtttttgcattaatcGAGTGGCGATATTTTGAGACTGGCATGCTTTTGAAGCCAACCGTACCGGGACTGTGCGCGATGTTGCAGACGATCTATGAGACAGAGTCCTGCTTCTCTTCAGACAGCACGTCCAGCAGAGAGCGACCCGTGGAGCTGCTTTCTCAGTCCAGGAGCACCAGCATGCCCAGCACCGCAGTGGATGTAAAGACCTTGCTCCCCTCTGGGATGCAGAGCCCGGTGGGCGGTGGAGGAGATCAGGGCGGAGGCAGCGGAGGGCCGGTGGATCTGCGTACGGACCCGCGTCTGAGCGCGCTAAGCACGGTAGACCCGGCGCTGAGGGAAAAACAGCTACAGCACGAGCTGCTCCTGCTCAAACAACAGCAAGAGCTGCAGAAACAGCTGCTGTTCGCCGAGTTCCAGAAGCAGCACGAGGTTTTGACGCGTCAACATGAAGTGCAGCTGCAAGAACATCTGAAGCAACAGCAGGAGATCCTTGCCGCCAAGCGTCAACAGGAGCTGGAGCAGAAGAGGAAGTTGGAACAGCAGCGGCACGAAGAGATGGAGAAGCAGAGACTGGAGCAACAGCTCATCATGCTGCGGAACAAAGAGAAGGGCAAAGAGAGTGCTATCGCTAGTACTGAGGTCAAACTGAAGCTGCAGGAGTTCCTGTTGAGCAAAAAGGAACCGGGCCCCGGTGGACTCAACCATTCCTTCCCCCAGAAGTGCTGgGGGCCTCACCACGCGTCCCTGGAGCAGAGCTCCCCTCCACAGAGCAACACACCGGGCACGCCGCCCTCCTACAAACTCCCCCCACTGTTAGGGTCCTACGAGGGCAAGGATGACTTCCCTCTCCGTAAGACCGCCTCTGAACCCAATCTGAAGGTACGTTCACGGTTAAAACAGAAGGTGGCTGAGAGGAGGAGCAGCCCACTTCTTAGACGGAAAGATGGTACTGTGATCAGCACCTTCAAGAAAAGGGCGATTGAGATCTCAGtgtccTCTATGTGCAGCAGTGCTCCTGGCTCGGGTCCCAGTTCTCCGAACAGCTCTAACTGTGCCATTGCCGAGAATGGCTCCAGCGGATCCGTCCCAAACATCCACGCTGAGCAGTTGCGTTCTCTGCATCAGTCTTTGACTGGAGATGGGACACCGAGTCCCCTTAGCCTCTACACCTCTCCATCTCTGCCCAACATCTCACTTGGACTGCCTGCCAACGCGCACATCACGGCTCCTCAGAAACTCAGTGCCCAGCAGGAGGCAGAGCGGCAGACAATCCAGAGTTTGCGGCAAGGTGGGCCACTGACAGGGAAGTTCATCAGCACATCGTCTCTGCCGACTGGCCTTCCTACCGTTGCACCCCATGACCCTGAGCCCCCTTCCGCTTCTAATAGCCACAGTAGCCATTCCTCGCTGCTCCAGCACGTCCTGCTGCTGGAGCAGGCTCGACAACAGAGCGCACTTCTCGCAGTTCCCATGTACGGACAATCTCCGCTGGTAACGGGTGAGCGGGTGTCCAACAACATGCGTACAGTGAACAAGTTGCCTAGGCACAGGCCGCTGAGCCGTACCCAATCAGCGCCGCTGCCGCAAACACCACAGGCCCTGCAGCACCTCGTAATGCAACAGCAGCACCAGCACTTCCTCGAGAAACAGAAACACTACCAGCTAAATAAGATCCTTTCCAAAGGGGCTGAACTTCCAAGGCAGCCTCCCACGCACCCAGAGGAGACAGAGGAGGAGCTTACAGAAACCGCAGAGATGCAGGATGAGCGGGGGGAAGGGCTTGATCACATAAGGGAGGGGCTACAGAAAGAGAGCTCCGGCGAAACCACACCCCCTTCGGAACGTCTGGTTCCGTTGAAGGGAGAAAGCACAGAAAGTGATTTGGAGGAGGAAGACGATGAAGACGAAGCTATTGAACTTAGGGAATGCGATGAAGAGGGCGCTCCCTATGGCCAGTATTTGGACCAGCAGCATGTGCAGCAACTGAATGTGTTCCAGGCATCTCTATCCATCACAGGAATGCCCCACAGACCCCTGGGAAGGGCACAGTCGTCCCCCGTCACTTCTAGTCTTAAAGGAGCGCCTCTGAACGAGGTTCCCATTAAGCATCTCTTCACAACAGGGCTGGTGTACGACACCTTCATGCTGAAGCACCAGTGCATATGTGGGAACACAAACATTCATCCCGAACACGCCGGGCGCATTCAGAGTGTTTGGTCCAGGCTACAGGAAACGGGGCTGCTTGGGCGCTGTGAGaggATCAGGGGAAGGAAGGCCACGCTAGACGAAATCCAAACGGTTCATTCTGAGTATCACACGCTGCTCTACGGCACCAGTCCACTGAACCGACAGAAGCTGGACAGCAAGAAACTTTTAGgtcCAATAAGTCAGAAAATGTATGCTGTCCTTCCATGTGGAGGCATTGGGGTGGACAGCGACACAGTGTGGAACGAGATGCACTCGTCAGGTGCGGTCCGGATGGCGGTGGGCTGCGTCATTGAGCTGGCCTTCAAAGTTGCTGCTGGAGAACTGAAGAACGGGTTTGCGGTGGTCCGTCCTCCTGGTCATCATGCGGAGGAATCGACCGCCATGGGTTTCTGTTTCTTCAACTCGGTGGCCATCACTGCCAAACTCCTGCAGCAGAAACTCGGGGTGGGCAAGATCCTGATCATAGACTGGGTGGGTGTAGGTCCAGGAGAGGGCTTTAATGTCAACATTGCCTGGACGGGTGGAGTGGAGCCACCTATGGGTGATGTGGAGTATCTAACTGCCTTCAGAACGGTGGTGATGCCCATAGCCAATGAGTTCTCCCCGGATGTAGTGCTAGTGTCAGCTGGTTTTGACGCTGTGGAGGGTCATCAGTCCCCCCTGGGTGGATATAATGTCACCGCCAAATGTTTCGGCCATCTCACTAAGCAGTTGATGAAGTTGGCTGGCGGCCGTGTGGTTTTGGCGCTGGAAGGAGGTCATGACCTCACCGCCATCTGTGACGCATCTGAGTCCTGCGTGGCTGCATTGCTTGGAGACGAGTTGGATCCTCTACCACTGACTGTGCTTCAACAGAAACCATGTCCAAAAGCCACAGCCTCCCTAGAGAGGGTCATTGAGATTCAGAGTAAACACTGGACGTCGCTGCAGAGGTTGGCTCCTACAGTGGGTCACTCTCTACTGGATGCTCAGAGACGGGAGAAGGACGAGGCAGACACTTTGACCGCCATGGCCTCTCTCACTGTGGACAACGATCAGCAAAAGACCTCCACAGAAACCAGCAGATCAGCGGAGGAGCCGATGGAGGAGGAGCCCGTGTTGTAGAAGAGCGAGCACAGTGCATCACTGCTCCAACCTTCTTGTCCACGCGTGCTTGGCACTGGTCACCCTGACGTCACGCCTCATGTTCCTCCTCCCAGCTCTTTGATTGGTTCCCTCGGTCCTTCACTCATTTCCAGGTGCTTGACTGACACGTTCACAGCCCACCCACTTCGGCTTTTCTGAGGTTAAAGCATAGCAAACTGTTGCTGAAAGGGGACGACAAGGCATGATGAGTAATTACAGGACCGCTCCAGTGAGGGTTGTGCGAGCTGGACCGGCCGAACAATGGAGTGCTCTTCAGAGAGAGGCCTTCGATTTCATTTTCTCATCGTATTGGACTGAGGACGTAaagaagaaaatgcaaaaaaaaaaaaacgaaaaaacgaaaaaattcaaaagaagaggaggaagggAAAAACAGTGTGACAGCACAGGGAGGTTGTCACTCGGAGGGCgaaaagctttgttttctgtACAAAGTATATGTACAAAGTTCCAAAAAAAGCCAACAAgcagcaaaaatatttcagcacAAAACACACTTATACACTCATTCACGAGCAACACGGTTCCCGAAAGAGGAACCTGCTGTGTCGAAACACCTTTTGCAGACAAGTATACTCGTTTACACTGTACCGTGTCGATTTTTTTGGTATACTTGTTCATCTGTATAATAGCCTGTTatgaaaagcacacaaacatacaagaactataatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatgtatatgtatatgtatgtatgtatgtgtgtaggTTTGTGTGTACCGTATACACATttgaatatacaaaaaatatataaatactttatatCCCCTATGGAACATTTTCTTATCAGCTGTGGTTGTACATACAGTAAAAGAGCCTGCAGACTTTTATCCAGAAGTGGAAGAACGGTGGTTAGCCTTTTTTCCCAGAAGCATTTCTTTTCTCTCAGAGaaaacagtacttttttttggaacatgCGGCTTTGCTATGAGATACTCGCACATAAACGTAAATAACGGCAACCCATCCGTTTTACGACAGAGGTGTAAAAAGCGAAGAGAGGATTTTCGAAGCATCCATCTCGACCTTCGGTGGAGAACGAGGATGGCAATGTCTcaagaaagacttttttttgttgttgttgttgttgttgttttcaagaACTCGGTGCCTTTTATACTAAGGAAAACGTTTGACAACACCAATACTTAAGGAATCGAGAATCCTCAGACTTAACTttcattgatttgtttgttttttcaaattgCCTTAATTTTTTCAGAGAAAATGAATTTTAGCCATGAACGACGGAGAGCACAAAATGATTATCGTCCTCCTCCTGCCCCGctttctttccatttctttctttagtttttctttcttttggggGGGAAGGGTGTAAATGTTGCGTTCTTGGTTttgatacgtttttttaaattattttaatgctaacAAAAGAGCGAACGAAACCATTCAGCGATCGTTGTATTTATCGGTCCCGTGCCGTACGGGAGCACATGACGTGATTGTTTGGAAACACTGACGATGTTGTGACCAACTTGTTTAGCCTCACCTTCCTTTGTACAATTACTTGTTCGGCTCCCTTGCGCTCTTTTCTTCAAAACTcgttttatttgactttatggCGAGAGAGTGTTAtcggtggggtttttttttttttattacaagttttttttgtacaaaaatgtaaaaggaaacaaaaagtCTGTATCAGTGTTAATTTGTCATTTGATTTGAAGTATTCTCTGATAAGGAATGTACAGCGTGGTACAGATATTATCAATGATGTTGATTTATGTCACTGTGCAGTGCATTTCGCATtgtccttttttcagaatttaacaatatttttttttccctggcAATAAGAGTGACCAccactttttcagtttttttccatgTAACACTAAAATACTCCGTCATCTTTGGACATAGCTTGTATGCTACGGATTCGGTTATTTTTCACCGGACTAATTAGTATTGTTCTTAACTGTCGACGGTCGTCTAATAGCTGTATGCTGGTTAATCACCTGTGCACTTGTTGAAATGCACCTGCTTGTTTATGACCCTGAAATAACGATTCTTCATTACATTTTCACTGTGCgacaacagctttttttttggaggggggGCCAAATTCGATTTCATCCGCTGCGTCTTCATTCACCGTCACCCTCGTGCTTTAGCAGCGTCCCGGAAGCAGCATTACTCAATCTGAGAGGTCACGACCTTTCCGACGGCGAGTaacgttacttttttttttttttttttttttatgagactGAATCGGGCCTCGAGCATCTTGCACTAATAACTACACTGTAGGTCCGAATCCAATCgcgtttggtttttttgtttttttttgttctttcagacACAAATCAAGAGGCATTAAAAGCGGAGTGAATTATCTCAGCGAACGGCGCGTCAGCGTTtttcggtttttttttttgtacgttcATCGATTTGCCGATGAGCTGTTGACGTTGAAACGTTAGAAATTTCGCCTGCGCATTTCTCGACTCTGCTcgcttttgatttatttatttggagtCAGAAATGACCGCTGAGAGTTGCGTTGAGTTGCTCACGGATCGATGTGCGTCTCGTTGTCAGTCGATGCTGAATTCCATCGCGTCTCTTCGACGGCCTCATAGCCTTTGGGCAATAACGTTTTCTAAAAGATGTATTACAATAGCTAAAAGCGAACGGCCAGTTTTTTCtctcacaacaacaacaacagtcgTCTGTTTGATACGTCGTCATTCTGATAGTATTTatacatgttgttgttttttttttccaacactAACATCCCCTTAAGCTGTTCATCCGGTCTCTAAGCGTCTGTTGTCGGTGGTTATTACCGACTTGCTTTTCGCTCGAACTTCGGTTAAAGAGAAACGGGAAACAAACACTTTGTGAAAAAGCGGGCTGACACTAGCCTCTGTATTTAGATGCTGTAATATACACTAAGAGAATTTCCCTCTTCTATGTGGCTATGGGATGTGCTGTCTGAATCAGGAACTACTGTGATCAGGTTTCGTAACGTTTGGATGTAGATCACCAACCATTTGTGCAGAGTTTTGTATTTTCACCTTATGTGGCGTCAAACAGTTTCTTGACCGTGCAGTTGGTGGTGAACGCTTTTACTCCTTTTCTTTTCCCGTTCCTCTTATACTTTTCTGAATGGACCCCGAGAAGTCCCTTTCGGAGACCTAAACCTTCTCTTTGGGTGCGTTGGGTTGAGCAATACATAGAGAGGGGAAACGATCGCTCGGATGTAATGCAGTGCGACGCTTGGCTTTCTTAAACGAGGCTCCGAGGGAGACGGTTTGTCTCTCTTGATGGACGCCTTCCAACGCGTTCTCTTTCGCAACGACAAAGAAAACAACGTCAACGGCGTGAGCAGAGCCTTACGATGGACACCGAGAAACCTCTGTACGTGTAAAAGACATCGACATTCGCCGTGGGAAGATAGCTTTACTGTCTCTGCCACATATTTTGCTATTgggtaaatatgtatatttattgataATTCATATGTTGTGTATATGTAGTGACCTATGATCGTCGAGGTTCAAAGagtgtttgtatattttttgacttttttgaaaGAGAGGTTGTGTCTCCTTCACCGTCTCTTCATTTCTCTGCTGTTTCGCTGCATCACTCGTTGTGATTGGGTGTTTCAATTCGTGAGATCTTTTAACCTTGGATTTTTAAgatcttttttctctctcgctctcgactctctctctctctctctcctctctttcttgTCTATCTTCTGGTCATATTGATATGCAGAAGTTATCTGAAATTATCAAAGCACATTCCCTGATTTATTGTGTTCTTTCGATGCTTTCATGTTGCGACAATACAAAGGTGTGTATACTAACTgctacacacatgtatataggGTGCATATATGTGTACACATGTGCAATACACGCTATTTGAGCAATCTATTACTGTGactattaatcattaaaaattgcTGTCCCTTTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33114 lncRNA upstream 4504 22269177 ~ 22287045 (+) False hdac5
XR_006250495.1 lncRNA upstream 201618 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA upstream 201618 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA upstream 227449 22035917 ~ 22064100 (+) False LOC122341843
TU33101 lncRNA upstream 312534 21977618 ~ 21979015 (+) False wnk4b
TU33157 lncRNA downstream 175201 22511428 ~ 22640362 (+) True G22340
TU33156 lncRNA downstream 261791 22598018 ~ 22672911 (+) False G22340
TU33382 lncRNA downstream 387817 22724044 ~ 22725888 (+) False hoxb5a
TU33399 lncRNA downstream 429519 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 563106 22899333 ~ 22903541 (+) False LOC122341356
XM_043233880.1 mRNA upstream 34557 22124890 ~ 22256992 (+) False tanc2a
XM_043233681.1 mRNA downstream 768 22336995 ~ 22342536 (+) True lsm12a
XM_043235650.1 mRNA downstream 8435 22344662 ~ 22347767 (+) False si:ch211-237i5.4
XM_043235649.1 mRNA downstream 8643 22344870 ~ 22347767 (+) True si:ch211-237i5.4
XM_043231537.1 mRNA downstream 12890 22349117 ~ 22356519 (+) True nags
XM_043231545.1 mRNA downstream 12890 22349117 ~ 22356519 (+) False nags
XR_006248300.1 other upstream 265638 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 314884 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 557422 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 877263 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 1977218 20314260 ~ 20314331 (+) True trnac-gca_3
TU33161 other downstream 192762 22528989 ~ 22530060 (+) True G22344
TU33136 other downstream 209931 22546158 ~ 22547208 (+) True G22329
TU33451 other downstream 569150 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 822022 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 1067214 23403441 ~ 23408814 (+) True LOC122341907

Expression Profile