RNA id: TU33157


Basic Information

Item Value
RNA id TU33157
length 1722
lncRNA type sense_over
GC content 0.42
exon number 5
gene id G22340
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 22511428 ~ 22672911 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttttttttttttttttttttttttttttttttttttggATTTCAACCATTTATTTCAGATGGTCTTATGTGAAGTGTGTTCTTACATAAAACTTTCAGATAGAGAAAAACGGTACAGGGGAACATAAAAAGGGAGAgagtttcttgttttgttgGAATGGCGGTGCCACGGCCTAAGCTGCGTGTCAGAGTTCCAGTCTCCAGATCAGGGGAGTCGAACCGCATGAAGACATCCAAATTACATGGCAAACAGGATGAGGAACGCCACCATCAGACAGAACAGACCCATGGCCTCAGACAGAGCAAAGCCTAAAATGGCGTAGGAAAAGAGCTGCTGTTTCAGGGAGGGATTCGGCATAGCCGATAATGAGGCTGCCGAACACGGTCCCGATTCCCGCTCCTGACCCGGCCACACCCACCGTGGCAGCTCCAGCACCAATGAACTTGGCCGCTGTGTCGATGTCTCTGGATGCAGCACTGGTCTGGAAGCCCCGGGTTACATTGAGAAGGCTCACTTCACTGATCGGCAACAGAGCGGCCTTCAGTTCTTGCTTCACCTCTGCTGAACACCACTGAAACAGGCCGGGCCAAAACCCTGGATCCTCCACGGACCTGAGgtagaaaaatattaattcagaATGAGAACTAAAATGGGAtgagcattgtttttttttttttttttttttattaaagcaactTTCAGACAAGTTTTATGTGAGTGCAAGGATCCAATTGGTATTAAATGTGATCAAAAACCTTAAATCAATGcacttgaagaaaaaaacatgttggtATTTAATTACTGCTCTAGCTCTTTTCCTAATCTAGCTTCTGAACAAACATGGCATCTTTTACTATGATTATCGACTTGCGTTCCTCTAATGCAACTTTGAACCAAAACATCTAAAATTCATAAACCTAAGCCAAGCctttaaatgcatgattatgAATGTGGTTAGAACTAATTAACAGACAATTACTCAAGAGACAAAGGGTCTCTGAAAAGACACGGCATTAAGGTCATTTTCTGAGACGGTCAATGGAGTGTGACGTATTTGAGACTGAATACATACCACAGCAGGTGAGGTGACAAACTTAGCACAAGCGTACATGTTTGAAGCCTGTGGAGAAGGAAGATGTTAGACAGGTAAAAGAAAAGCACTAGTTACAGCATGGCATGGAATTTAGTGTTCATTTAGTGTAATATACACCGTGATAGAGCGACAAAGACAGGTTTGGGCCATCAAGACTTAGTTTACAACTCACTTAGCAACTGAAGAGACTTAAGATTAAGCCATTCAGAGAAAGcaaatgagattttaaaaagaagtcCCATCATTTAATCGGCACCTAAACCAAAAGACCCTTTACACGCATCCGTTTAGATCCGTTTGGATGCGTGCACATCCAATCAAAGGATGAAAGACTGCTTCGGCCCAAGACAACATCCCCTGTAGGTCAGTGGTCAAACATGGCAGCATAGAGGTCACGGACTGGCTGTTTTGAGTTTTTACACACAATAAAGATGCACGGATTGGTGGGATAGTTTaagcatcaaaaataaaatcgaGGTTATTAGATGGAGCCTGTTCAACAGTCCACATTGTGACACGAGCATCAACTCAAGTCCTGCCATAAATCCTGGACTCAATATATAGATAACTCTATATCTTCCCTCTCATGCAAGCTCTCGTAATTATTTGCAATTCAAAGTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33113 lncRNA upstream 175207 22288141 ~ 22336221 (+) False hdac5
TU33114 lncRNA upstream 224383 22269177 ~ 22287045 (+) False hdac5
XR_006250495.1 lncRNA upstream 421497 22035882 ~ 22089931 (+) True LOC122341843
TU33104 lncRNA upstream 421497 22035917 ~ 22089931 (+) False LOC122341843
TU33106 lncRNA upstream 447328 22035917 ~ 22064100 (+) False LOC122341843
TU33382 lncRNA downstream 83682 22724044 ~ 22725888 (+) False hoxb5a
TU33399 lncRNA downstream 125384 22765746 ~ 22766130 (+) False hoxb2a
TU33447 lncRNA downstream 258971 22899333 ~ 22903541 (+) False LOC122341356
TU33448 lncRNA downstream 258971 22899333 ~ 22901102 (+) False LOC122341356
TU33452 lncRNA downstream 265380 22905742 ~ 22906695 (+) False LOC122341356
XM_043228511.1 mRNA upstream 20638 22455402 ~ 22490790 (+) True ppp1r9ba
XM_043234902.1 mRNA upstream 61779 22434373 ~ 22449649 (+) True col1a1a
XM_043235855.1 mRNA upstream 123943 22384731 ~ 22387485 (+) True gngt2a
XM_043235854.1 mRNA upstream 123943 22386843 ~ 22387485 (+) False gngt2a
XM_043235455.1 mRNA upstream 128641 22374082 ~ 22382787 (+) True LOC122341813
XM_043235467.1 mRNA downstream 33114 22673476 ~ 22675120 (+) True hoxb13a
XM_043225470.1 mRNA downstream 44651 22685013 ~ 22689691 (+) True hoxb10a
XM_043235998.1 mRNA downstream 50816 22691178 ~ 22699171 (+) True hoxb9a
XM_043228340.1 mRNA downstream 63562 22703924 ~ 22706737 (+) True hoxb8a
XM_043228350.1 mRNA downstream 63583 22703945 ~ 22706737 (+) False hoxb8a
XR_006248300.1 other upstream 485517 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 534763 21975252 ~ 21976665 (+) True G22301
XR_006248723.1 other upstream 777301 21637743 ~ 21734127 (+) False crhr1
TU32806 other upstream 1097142 21295702 ~ 21414286 (+) True G22087
unassigned_transcript_291 other upstream 2197097 20314260 ~ 20314331 (+) True trnac-gca_3
TU33451 other downstream 265015 22905377 ~ 22906695 (+) False LOC122341356
TU33550 other downstream 517887 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 763079 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 1195737 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 1409877 24050239 ~ 24051863 (+) False LOC122342055

Expression Profile