RNA id: TU33498


Basic Information

Item Value
RNA id TU33498
length 3086
lncRNA type sense_over
GC content 0.42
exon number 2
gene id G22581
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23089473 ~ 23095422 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ttttttttatttttacatacaataaatattttaattgaagcaAGAACAATCCCAGCTTGTCACCAAGAACATGAATTCActgcaaaatatttaacacaagGTACATAAACAATTGAatataaaaagattatttacaaggctttttaaaacatgaaatcaaatcCAGAtgatgttataaaaaaaaatcagcaatgAATTGTTAAACTAACATAAATTCTAATAAAACTACATGTACTCAACCACAGAACTCCCGTTCGTTCAAAATATTGTGGGTCAGAAATACTTTACAGTTTTGTTAAGTAAATGTTAGTACAAAATTAAGCTCACGTGGCATGAAGCTGCTCTATAATGAGGTGGCAAACCATCACTTTTTTTGTACCGTTTCTATTTGTTTGCGTAGTTGAACACGTAGTCTTTCAAAGCATACTCTTTATCAAATAACATGCGTTctagaaagcttttttttttctcctgaagTTTAGACCGATAAAATgtctttgtacttttttttttttaaagttgtagCTCTCTTATAACACTCTCAAACCAGCGCTTCTGTTGTTGcggtctttttttttctttttttcctttttacctCTTTCAGTTTCCTTTTCTACTGTGAAACAGGCCACCTTGTGGAACAACTGATTAGTGCAAAACCAAGGCAATGCGCATGTGTGATCCGCATGTAAAGTATGCTGATTGTATTTTGGTGATGAATATTTGCGTCACGTACACTAGTTATGATTCCATCCGAAGATTCGCATTTAACAAGAGTTGCATATAACGTTTGTGAATAATGCATCCATTGAGTCCAAGATAACAAATTCGACAATTCCTGATAAATTGGCACTTAATAGCCTATCACTAAGAAAAGTAGGTAAAGCCACTAAATATAATACTTTTCATATGATTCTTTGTGCCTCACGGCGAACAGGCGAAACACAATAACTGTGgtgtaatacaaatatatacagaaatactttGATGACAGCCTTTGCTCAAGCATCTCAGaaccaaaacaacatttcaaatgCTGTGCAACGAGATCGGTCCGCTGGTTAGTCGGGTTAACCCCCCCACCCCGGCCCCCGTGTCGTAAGGAGTCACATGGCTTTCTTTGACACGAGTGGTGAAATCATAGTTCATGCACTGTTTTTGGTTTTCCAtgcacatttttgtgcattgtgAAACCACATAGCAATACTCCAAAAtgctcatgaaaaaaaaaaggtggatggaaacatagctacTGTAAGCGGTGTCCTTTGGCCTTTAGCAGTAGTTAAAATCCATTAAAACTTTGTGGCGGTGCTCGGATTCCAAGCATAATTTTCCATTTTCTGCTATAACATGGGATAATGTTGGTTTTATGTCTTCGGGAACAATTTCAGACGCTCCTTATGTTCTTGTAGCCCAGTTTGGTTCATGAACTGGACGTGAAATAGAACTTGTAATCATATGTTTCTTCCTATTGTGTCGTAAATCTGAAACGGCTTCTCGAATGAGAATTTTTCACCTTCTCTGTGAAATAAACAGTCTGTTGCTTGCTGCTGTGCCTCGTTTACATGTGAAATGGACAATAGCGTTGTGCACACGAACTGCGGTATTGCTCTCCATTACAGTAAGTTTTTAAGAGTACATAAAGGCCTTTAGCTTAAAAGGTCAGGGGAACTCTTGATGTGGCCCTTTAGCATCAAAACTTTGTGTTCCTATGTGTGCCTAAATAGTGCAATACATTATAAAGTATGATCACTTGGGTAATAATACCCTACTTGGTGCAAATTCCCAACTGTGGAAAACCAGCAGTTGGACTTCACAGCATTTTTTCCTGAGCCTAGTCATAGCACGAGTCCTCCATCTCACttcttgtgtttttgtctcttgCTAAGTTTGCGTCTGGAGTGTGAGTCTGTTCTGCGCTGTGATGTTACAGGGCAGGTGCTGAAGTTGTTGTCAGAGTACAGCAGCCCCTGTTCCTCTCTTAGTCTCTCGTAAACCTCTTGATACAAGCTGTTTAGATGCTGCTTCATCTCCCTGATGGAGCGCAGGATCTCAGACTTCTCCCTGAGCAGTTTGGCCCGGAGGCGTCTCAGGCTATCCACACTGCACTCCAATCCCAGCAGGACATCTAGCTTCCTCCTCCGACAGTTCTGGgcagccattttgtttttaccCCTGCGGCGAATGTCTCTGATAAGCGTAAGCTGAGCCTCATTGAGATGATATTTGGCTAGCAAGCGATTGAAGTCCTCGACGGGTAAGTTCACGATGTGTTCATTGGAGAACGGGATATTCATCGAACGTGCACGTTTCTCATCCCGGCCGGATAGATGATCCAGAACTTTGTCTTTTGGCGACTCGTCGGAAAGATCTTTTGGCGGTTTCTTCTGGCTTTGGGGTTGGTTGTAGGTATGATCGTGTCCGATGTGCTCGAGCCAAGGAAGGCGATGGAACTGTCTGGCTTCCAAAAAGCTTGACTGACACATTTTGCTTTGTTCTGGCATGTACCCGCCCACAGCTCCATCCTCTTCCTTGATATGAGTATAACCCACAGCGCCGCCTTCGTACATCAAACCAGGGCTTGGGCTGGACAGTGACGAAGAGCACgaagaagatgaggaggaaTTGGAAGATTCAGATCCACTAGGAGAAGCAGGGCTTTGACTGTAATCCAGGGATAACCCAGAGTCGGAATCTGCTGGGTTCTGCTCTTCAGATTGTACCTGGCTCAGTTCTTCCAGAGCCAAATCCATTAGTTCAATCTCATCGAGCATGGCTTCCTCAAGCAGAGGATCTATAGGGCTTGGCAGGCTAGTCCCGTTAGTCATGAGGAGGTCTATGATATCAGAGTCTTCGAAAGCTTCTGCGTTATAAGAAGTGTCCGAATTAATGTTCGGCATGGAGTTGTTGTTCATGCAACTGGTTTCGTCCATGGTGAAGCTGTTTTGAGCTTCAGTGGATCTTGGCAGAGTGGCTTGGGGAAGGCGAACATCCTGATGAATAAAGTTTTCCAATGAGCCAGTGTTTCTGTCTGAATCACTGACACTGAAAGGAGAATCATCTATTGTTTCGGCTGTATCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33443 lncRNA upstream 60968 22940247 ~ 23028505 (+) True G22554
TU33452 lncRNA upstream 182778 22905742 ~ 22906695 (+) False LOC122341356
TU33447 lncRNA upstream 185932 22899333 ~ 22903541 (+) False LOC122341356
TU33448 lncRNA upstream 188371 22899333 ~ 22901102 (+) False LOC122341356
TU33399 lncRNA upstream 323343 22765746 ~ 22766130 (+) False hoxb2a
TU33501 lncRNA downstream 5522 23100944 ~ 23148618 (+) True G22582
TU33504 lncRNA downstream 18856 23114278 ~ 23116840 (+) True G22584
TU33611 lncRNA downstream 242992 23338414 ~ 23343588 (+) False dnal4a
TU33652 lncRNA downstream 248542 23343964 ~ 23348567 (+) False LOC122341898
XR_006250502.1 lncRNA downstream 301079 23396501 ~ 23400922 (+) True LOC122341922
XM_043235957.1 mRNA upstream 170512 22912566 ~ 22918961 (+) True LOC122342153
XM_043234705.1 mRNA upstream 181338 22899342 ~ 22908135 (+) True LOC122341356
XM_043235442.1 mRNA upstream 306378 22779834 ~ 22783095 (+) True hoxb1a
XM_043230271.1 mRNA upstream 318871 22765647 ~ 22770602 (+) True hoxb2a
XM_043230233.1 mRNA upstream 323937 22758331 ~ 22765536 (+) False hoxb3a
XM_043235459.1 mRNA downstream 8335 23103757 ~ 23114098 (+) True copz2
XM_043231035.1 mRNA downstream 33362 23128784 ~ 23135038 (+) True LOC122333434
XM_043231044.1 mRNA downstream 33363 23128785 ~ 23135038 (+) False LOC122333434
XM_043231053.1 mRNA downstream 33363 23128785 ~ 23135038 (+) False LOC122333434
XM_043235616.1 mRNA downstream 62797 23158219 ~ 23163710 (+) True prr15la
TU33451 other upstream 182778 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 542265 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 559413 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1063562 21976509 ~ 22025911 (+) False wnk4b
TU33098 other upstream 1112808 21975252 ~ 21976665 (+) True G22301
TU33550 other downstream 62827 23158249 ~ 23163716 (+) False prr15la
XR_006250499.1 other downstream 308019 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 740677 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 954817 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 955316 24050738 ~ 24051863 (+) False LOC122342055

Expression Profile