RNA id: XM_043235582.1


Basic Information

Item Value
RNA id XM_043235582.1
length 5698
RNA type mRNA
GC content 0.42
exon number 21
gene id LOC122341898
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23343964 ~ 23361942 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGAGAGTTTCCAACACGTTCCCTCCCTCACATGTGGAGATATGTCACTCACACggtgtttgtatttgtgtgcgTTGAGTTTTCATCCATAAATTTCTTATTCAGGCAGGAATTAGAAGACCGCCGGATTCCAGATGCTTCCTCGACCTCAGCGGTTCCGTCTGAAGCCCAAACAACGGAGCGGCCGTCCACGTGGAAGAGAGTGTGGAGAGAGTATTGACGGACGAGAAGAATTAGCAAGGGTGTTGTGCAACCGGACTTCAGCTGTGGAAACGCAGAAGCCGCACGTTCATGATTTGACGCTGGGGATGGGCCTCTTCGCGGACGGCGGCGAGCCTCTGAATTAATGATGCGGTGGATGGCGTCTGCTCGCTGTGGGGATAGAGACATGTCAAATCCACTCCTGCCGGTTGGCCGCTGCTTTAAAAGGCTGATTTCCCCCGGCCTCTTCTTTTACAAGCGCCGCGTGTTATGTAAAGGATCTTTGGAGATCAGCAGAGGTCTGGCTTTAGGCTGGTGCTGGTCTGCGTATGGCCTGATCGTGTGCGTATGTTTTCCCAAATCCAGGATTTCTGACGTCAAGTTGCGCGTGCTCATGTTTCCTTAAAAGGGTGCCTGACGTCTCCGGTTCGATTCTTGCGATGCATCGCCAGCTAAGCAGGAATTAacgtttgcatttaaagagacagctcACTTAAATGGATAGCTTGCCTATTGATGAAAAGTCTGTCACCGTTTAATCACCCTCGAGCTTTTCCAAACCTGACTCGTTGAGCGCAAAATATGGTATTTTTCGAAGCAAACTGCcaggttttattaaaagaaaacattcaacGATAACAAAATGTGTGCTTTGCTCTCAGGTGACATTTTATGTGAACATGCAAATGAGAGATGCAAAGTAACTGTGCTAATGTCTGAGATATTTTGCGAGAAACTGTTTCCAAGTAAACTTCAGAAGACTGGGAATACAGAGCACATGGGAATTACTTACATAAGGCACAGGACCGTgagtaataaatacacacaaataccaaaacagagaaaatgcaGCACCTGCCAACAATGCAGGCTTTTGTTACAAAACCCTTATATGTAATTGCAGAAGGTGTTGTTTAACACAtctaatgacatttattattgaGCCCACATACATCTGTCAGGTCTGTCTTCGGAGACCGATTGATGTgatctgttaaataaaaaatcgtACATTAACTGTACTGTTCTGGGTCAGCGAAGTGATTAAAAAGCAGTGTAaagagaaggaagaaaggaaggaTGCGGAGGCGTTTTCATGTTGACGTGTGGTATTGTTTCCTGAGTGCATAGTTCTTGAGgtaatttctgaaaatattttttaaagcatcgCACTCTTCTTCAGAGAAGTCactcaaaatgtcttcttttgtgttagaagaagaagaagtcgCCGCAAAGGTTTGGAGAGCGAGTAAACTCATCTTTTCAACACACAGTTCCGAGGGGGATTGAAAGTGACTCAGATGTGCTACTGCTCCctgcttcatttttaatattttattttgtcgtTCTCCAAAGCGGTAATTTTAGGCTCCGTGAAGAGAGATGGGCGAGGACGGCATCCCGGGGAATATTGTCCAATAAAACACTGGAGGGTTTGTAGCCTATAGAAACTCCCAGATGAAATGCcattaattgaaaacaaaaaaaactaaactgataATTTTTACAAGCTGCATTTTGGTGACTGCATGTTTTTCTGCtggtaatatatattatatgattacTACATTATatgatttaatgtattaaatcatACAACCcgatattataaaatacacagaTAATAAGTGTTATTGATTAAACTAAATAGTATCAATATAAGAGACATCGGTATAATAGACTGATgtttacaaaaatctaaatagtttcctttttaattttttaattattattatttttatattacatttttattaaagacttTTACACTTTAATAAACAAACCTGCTGTGTGGAAAgtcaagttatttttttattttatttttttagatcatGTGCGCCCTCTGGTGGACAAAATAACAACCGTATGAATGCAAACGCcacaaaaaacttaaaacaatgTATATTTACTGAAAGCTCACATAGAGGTGTGAGTGCTAGGATAATCGTTACATATAAAGCCTATtagcatatataaaaatgtatattcctCAATTAAAGACAAATTACAAATTTGCTATGGGCTGCTTTTGGtacttgatgcttttttttgttggcCATTTTGCGTTTCAAGAATAAGGTCCAAAGGGGTCATACAGAAAAGTcatgacttgtccacacccaCTGGCCAAACGCTCACACGAAGAAGGAAAGGCGTAGCTGTTATTCTCAAATAAGCACGGCTTTGCTCTCAGGTCTGAAGGGGTCGGTTAAAGAAACCATTAACAAAAAACCTCTATTGATCAACGCACATGGTTgattgcattataataaaactttttcagTCAGGAAGTCATGCATTTATTACCTCTGTTCGCATTTTTGTAACTAACAGAACTGGAACACGTGCAATTACGATGAACATCTTGGTAAGAAACGGTGTGCCTAAGATCTACCCTCGCCCTGCTGTCATGCGTAGgtgttttgaaagaaagcaGCCATACGGCTGGCAGAAATCCCGCCCCGTAACTGGTTAACATGAACGTTTTCTACACCACTTCCACTTTCTTCTCACGACATTAAACAGGCTAAAAGATAGAGGTGGGAAATTTGAAGCAACTCTTTCTGTTTGACCTCTCCTCGAGTCACATACCGTAATACACGATTTCTTCTAGACAGTTCGGCCGACGACAGAGTCAGCACCTAAATGGACTTTCTAGAATTTAAAACGAATGAAGAGTTACTGCTTTTCCTCCACCGGAAAAAGACAGAGATTTCGTGCGTAGAAGAACCGCGCAGACTTCTCACTCAGCTGCGAGACCACGATCTGGTGCCGGAGAACCTTTACGAGAGTGTGAAAAAGATGCGTTCTCGTAAGCAAAAGGAGAAGGGCTTCTATGATGTTCTGGACTGGGTGGAGAAAAACAGACCTCAGGACATGCATCGGTTCTGGCGCTGTGTGTTTGAAGATCATATCCTGCAGCTGTATCCAACACTACGCATCCTCAGAAACAGTCTGCAGGACGacactctctctttctcagcatCTTCTGTGAAGAAAAGAGACGAGCATAAGCTTTCTGTAACCTGTGGGAATAAAAGAGGCACTCTCTATCGGGACAAAATGGCCAGAGGGGAAGAGTGTATCTTGTCCCAGGGACGCTGGTTCACCCGATGTGGGTTTGAGAAGTTTGGGGAGAGAGAAAGGTGGAAAAACTGGAAAATCAGTATTCGCCACAGAAACGAACCGCTTAAGAAACTCATCAAAGAGGGGCGTCTTCATTGTCCACTGAGGAAGCGTAAAAAGAAAACCtgtattaaaaaaAACAGGAATGGGAGGTTTCCTGTCAGCTCATCTGAGAGCTCCGGTGCAGATACGAGCTCTGGTTCAAGGGAGGAaagtgatgaagatgatgatttCCAGGAGCAGGGAGGGAGAAGAGGAGTAACAGAGTTAAGAGAGAGAGTTGAAGAAGAAGACATGTCAgatctgtctgtttttcaggCTCCCTCTTTACCGGTCACCTGTGCTTCACTTACTGGGACTCTGTACAAATACAGGTTTGCGTCAGGGTATCGTGGGAAGTGTATACGTACTGAGGAAAGATGGTTCACTCCGGAGGAATTTGTAAAGCAGGAGCCGACTCTCACTGATGGACACTGGAAGAAAGACATACTGTGCCATGGAAAAACACTCAACTTTTTACTCCAGAAAAAGATCCTGTGCATCCGTTCCGATCAAGAGCAAGACATGATGGCCCAGAACAATGATGATGAGTGTTATGTGTGTCACTCTGTGGGAGATCTCGTGTGTTGTGACGAGTGTCCACGAGCTTTTCATTCAGACTGTCACCTACCTGCTGTACCTGAAGACTCATCTGgGGAATGGATTTGTACTTTTTGCAAGTTAAGAAACAGTCTACAACGGCTTGACCCCGCTCTGAACATGTCTAAACTTGAAGCTTTGAATTCCCCAGTGTCTCAATACATATTGCACTGCCGCTACCTCCTGTTATGTGTGTACAGACAGGACGTAGCCTTTTTAAATCACCGGATGTCTTTGGATGGAATAAAGCAAAAGTTGGAAAGTGGCGAGTATCAGACAGTAGGAGCATTCTTCTCTGACTTTAAGCCCATTTTCAGAAACTGCAGGACGTTCGATAGGgaCAGTGAGTTTGGCCAAATGGGTGCCAGgctgaagacattttgtagAGAAGAGTTACGGAGAATCTTCAAAATTGCAAAAGAGATTACACCTGAAATACTGAAGGAAGGTCgcaaagacaaacacaaaaaagtataCAGGTTTGTGTGTCCATATGCTGGTCAGTTTCGCTGCAGTCTGACCAGCCTTATGTTTGTGATGGAGGGTGAAGGAGAGGTGCGTTATAACACTGTCTCATGGGATCCTCATCTGTTGGGTTTGGGGGAGATGCAGCCTGCAGGACCCTTGTACAACATTAATTGTTTGAATGGTTTAATCTCAGGACTGCACCTTCCACACTGTGAAAAATTCTCAGAGCATGACATGGATTGTTTATCGATAGCCCATTTCACTGGTGGTAATGTACCAATAATAATCAATCCAGTTAAAGTGACTGAAGCTCTTGTGGTGACTGACATCAAAGATCTCTCCATCTTTGGGCTCATAAAAAAGACGAGCTCTCCTCCTTCCCCTGTCATTGCCAAAGTACTTGTCTTCCTCCGCCCGGTAACTGTGAGAAGGAAAGATCACATGCTGGATGTCCATTTGCTCCCATGGAATGTTCCACTTTCAGAGGTCATGAACCAGCACATGaagaataaatatattgaaaccAGTTCAAAGTGTTGTCTCGTCCCAGGAACACAATACCAGTTGTGCTGTCAACCAAAGATATCTACAGTGCATAGAGCGacgTTTAAGGTTAAATTTGGTCCAGACTATCATCCCACATTTAAAGTGCTTGTGAATGTCGGGCATAAGGAGGTCAAGCTAAGTCTTATGGATAACACTGATGAATGTGAAGTGTGGCTTCCACAACAAATCCTTCTCACAGcgcCAGATCAAGATGTATAGAACTCCCTGCTCAGAGAAGGATCAGAAtctgttgggtttttttctattgcgcacaaagctttttgaaaagttgaatttttttattttttttttttaatcagaatctGAATTTGTGAACAAACACAGACATCTCCACATGGTCTATGTTCATGATTACAGTTGAAATTTACAGAGAACTTGATCTAATACCACTACGAAGGAAATTGAAAGTCTTGTTGGATGCTCTCGACTCTGAAGAAGCTTATGCAGAATTCTACAGATTGCTGAAGGAGTATGAACTGGAGTCAGAACCCAGTAAACCCCAGTAATGCTCAGACATTACTGCTGCTCCTTCACATGTATATAAGACAGATCCAGGTGCTTATTTTCTGAATTTGGTACGTAATTTAGATTTGATTATATTTCTGtacaatctcgtcattatacatccctatcattgtattcttctgctttgatacaacctgtgttgttaaaagcctacataaataaaaaaatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33611 lncRNA upstream 1830 23338414 ~ 23343588 (+) False dnal4a
TU33501 lncRNA upstream 196800 23100944 ~ 23148618 (+) True G22582
TU33504 lncRNA upstream 228578 23114278 ~ 23116840 (+) True G22584
TU33498 lncRNA upstream 249996 23089473 ~ 23095422 (+) True G22581
TU33443 lncRNA upstream 316913 22940247 ~ 23028505 (+) True G22554
XR_006250502.1 lncRNA downstream 34559 23396501 ~ 23400922 (+) True LOC122341922
XR_006250500.1 lncRNA downstream 50871 23412813 ~ 23414909 (+) True LOC122341920
TU33712 lncRNA downstream 68062 23430004 ~ 23431766 (+) False zmp:0000000912
TU33784 lncRNA downstream 201098 23563040 ~ 23563246 (+) True G22754
TU33788 lncRNA downstream 212956 23574898 ~ 23578241 (+) True G22757
XM_043235619.1 mRNA upstream 1778 23338379 ~ 23343640 (+) True dnal4a
XM_043235589.1 mRNA upstream 8933 23326597 ~ 23336485 (+) True LOC122341901
XM_043235595.1 mRNA upstream 25586 23310836 ~ 23319832 (+) False LOC122341903
XM_043235596.1 mRNA upstream 25586 23311063 ~ 23319832 (+) True LOC122341903
XM_043235617.1 mRNA upstream 44661 23262991 ~ 23300757 (+) True pvalb6
XM_043234706.1 mRNA downstream 10718 23372660 ~ 23392187 (+) True LOC122341358
XM_043235611.1 mRNA downstream 35817 23397759 ~ 23400922 (+) True LOC122341912
XM_043235602.1 mRNA downstream 41499 23403441 ~ 23408812 (+) False LOC122341907
XM_043235600.1 mRNA downstream 41499 23403441 ~ 23408811 (+) False LOC122341907
XM_043234707.1 mRNA downstream 48677 23410619 ~ 23412806 (+) True si:dkey-68o6.8
TU33550 other upstream 181702 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 438723 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 798210 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 815358 22528989 ~ 22530060 (+) True G22344
XR_006248300.1 other upstream 1319507 21976509 ~ 22025911 (+) False wnk4b
XR_006250499.1 other downstream 41499 23403441 ~ 23408814 (+) True LOC122341907
unassigned_transcript_294 other downstream 474157 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 688297 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 688796 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 733082 24095024 ~ 24097159 (+) True G22958

Expression Profile