RNA id: TU33788


Basic Information

Item Value
RNA id TU33788
length 3294
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G22757
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23574898 ~ 23578241 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CTTTATGcagagctgtttttttaatgagatgaCTTCCGTTAAAACATGAGTATAAAGCTCAAAACAATTAGCAACTATTCGACAATGACAACAACAGCATGAAAACAAAAGAGTGGAAATACTTTTTCATCAAACATCTCTGAATATGACACCGCCGCTtgtattcaataaataaaccGATTTAAAATAGGAATATGTTAATAAAGACCAAAACACATTCAACACTGACAACAGCAGCAAACTTTCCTTTCATTAAGGTAAAAATCAGCATAAAGCACATATAACAGCATTCAGCTGGGTAAATAAATGGAGAAGACAACATCTACTCTAACATGTATAAATAGTTTGTACTTTGCAGTTTAATTCTGACTAAAACGTTACTTGTAGCCCAAGCTGCCATGACAAAGGCACAGatatttctctaaatctgaGCCGCCATATATCcattcacatttattcatttcttcagagtCACAGAACATGTGCTTCTTTGCCACGAAGTcactcacaaaaataaataagtgttaaGAATAAAATTTAAGATAGACGTTCAACTTTTTTGGCTTACGAATATTAATACATATCAGCAGACAAATTAATGGGGGGgccaaaaatgcataaaatgatgcaaaaggaataaaaacgaacagcagggaaaaaaaagttggatTGTcatcaacaaacaacaaatgacCTTTGCACGTGGTGGGCTGTAGAGATGCAAAGTAAagatacatattaaaatgaaaaccataGAAACCAAGAACTCAACACTGGGAAAATACGCACCATCCGTGATCTGGTAAGAATGACCCGGGACCTCGAAACACTTTAAGCAAAACCGTCTCTGAATATCTGGGCAACTGTGAATATGGACCAGAATTGATGAGATTTTGTTCCGTGCTCTTGAACAAGGTGTTAGGAGCCAACTTCATTTACAACAGGGCAAACGTGTGTGTATAAACAGAGTATGTGTGAATTATTGCGCGagtaggtgtgtgtttgtgtgtgagagagagagattacaaAGCTGATCTAGCTATGATTATTTTGGCTGCTGATCACGTTTCCGCCTGGAGGGGCAATATGTATCGAGTCCAGGATTGGCCGCAACACCTGACCAAATggcctgagagagaaagagagagcatgAAGTACTGTGAAAATCGCACAGATCTTCTTACATAAATTTTCTGCATTGGAAATGCGACAGTTGGAAATGAGGGAACATCACAGTTATACAATCACAAATGAGCGAATCTTACAAACACATGGTCAAGGTCGCATTTCACTACAGAATCGATAGCTACAAATATGCATgcgtaaaatgtgtttttaggacCATTAAATgcatagttcatccaaaaatgatcatttttggtgGTTGTTTGCTATATAGTGAAAGTTGAATCCTATGTTGTTTTGGACCCTTTTGACTTTAATGAAACagttcagcaaaaaaaatgtaattccttTAGATGTAGTTGCTTTATAACCATCCAGGATGTAGACAGATTTGGaagatttgaacaaaaaaatgtaaatttcctGTAGGATGCAGACAAGGGGGTTTTTTACCcatcggaacagatttggagtgGTTTACATCAACAGTGTaccctttgcagtgaatgggtgccgtcaaaacgAGAGTccaaagagctgataaaaaacatcacaatacaCAAGTAACTCACACCACACTgattaatgtcttttaaatccAAACATTTCCTGTTTCTAAGAAACCGATTCGTCGAGATGTTTTTAAACCATTGTGTCCGCCTAAAATAGTCCTCAATCCATAATactgctttctccagtgaaaaagccattttgtctgaatcaggagaaaaaTCTCCAATGTTTTACAAGCCaaaacaaatatcaaatattgttGGTGGATTTCGATGTGAGAGAGCAACAGGGGATGGATTCACCGCCATTATAATGGATTATGGACTAATATTTAGagtttgtttattacaaacacagctttaCGAGACATTAATTGATaagactggagtgatgtggattactgtgatgttttatcagctgtttggactctcattctttctttctttttttttgttttggtcacaaaaaaagtgaactattccttcagtTATATGGATAATATCATTATAGAAAATACGTTTGTTTCACAAAATACAAGTCACGCAGGTTTGTAATGACACGACGGCGTCTCTTTAAGATTTCCCACAttattttctgtacattttaagcGCTTTCTAAACGTTATATTACCATGATGCATTAAGTTTGTTAAGTGTTTATAACgtattgactttttttgtaaaacatactccaaTAACCTCGTTTTTCTCACGAATGCGTTTCATTCACAACTctgaaacaataaatgtacagtGCCGATCTCaagccatttatttattctctgggcgcaaatattagtaataagtaaatactaaatattaaatgggAGTAAAAATAAGACTGGGAATCTTCTTGAACCACGCAGGCATGTATGTGAGCAGGTTTATGTTCAGCATACTCACGTGGAGAGCACTTCAGAGGGCAGATCTGTGATATAGGAGGGAATTTTATTGCCAGTGAGAAACTGGGCCACCTCATTAGTGAACGTGTTACAGTTGTGTTCAAACAATCTGTACTTGTCACCGctgcagagagagatagagacgaGAGATTTCAGAGGCCTACAAAATGCAAGCAACGCATATAACGCACATGTTTGTACAGTGCAAAAAGACCTTATCCCTGAAGAAAGGGAcacgtatttttattttgaataacaaACATCTCGCCTATATGTTGTTTCTCCAAGTGAGGACAGATAATCCATGAAGATCTCCTCCGTCACCTCCGTGTTCCCCAGCTCCACCACTGTGTCTGGAGGTCCGAGAGCATCGTCCcaccctgaaaacacacacacacacacggtgtaCCTCTTAAGGACAAGTAAATATGCCGAGATGTTTAAATCTTAACGCGAATGGCAATGAATATGTAAACAGAGGGCTCACAATCAGCACAACATGAAGTACCCCGAGTATATTTATGGGCTATGTTTTGAAGTGCTTGTCCTATCTTGAGTACTAAGTGTCATCGTGGGTTAAGATATTACCGGTGGGCAACTAGAGATCCCGGCACCACCATAGAAGAATTCCTCTCCGTAGACCACTATAGATGTGTGCCTGTGTTGACATATAATCATACAAGATAAAAGCTTTGAACTGTAATTTATAATAAGCAGGTATTAAATAACAGTATTCCACTTACCAAATGCCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33784 lncRNA upstream 11652 23563040 ~ 23563246 (+) True G22754
TU33712 lncRNA upstream 143132 23430004 ~ 23431766 (+) False zmp:0000000912
XR_006250500.1 lncRNA upstream 159989 23412813 ~ 23414909 (+) True LOC122341920
XR_006250502.1 lncRNA upstream 173976 23396501 ~ 23400922 (+) True LOC122341922
TU33652 lncRNA upstream 226331 23343964 ~ 23348567 (+) False LOC122341898
TU33791 lncRNA downstream 235 23578476 ~ 23621654 (+) True G22758
TU33792 lncRNA downstream 235 23578476 ~ 23646166 (+) False G22758
TU33837 lncRNA downstream 89664 23667905 ~ 23672990 (+) True G22800
TU33831 lncRNA downstream 93153 23671394 ~ 23749009 (+) True G22795
TU33845 lncRNA downstream 136985 23715226 ~ 23721719 (+) False c1qtnf6a
XM_043235087.1 mRNA upstream 94607 23444986 ~ 23480291 (+) True mrtfaa
XM_043235613.1 mRNA upstream 130824 23438398 ~ 23444074 (+) True slc25a17
XM_043235579.1 mRNA upstream 144496 23424621 ~ 23430402 (+) True zmp:0000000912
XM_043235605.1 mRNA upstream 153924 23415427 ~ 23420974 (+) True sp100.4
XM_043235508.1 mRNA downstream 4190 23582431 ~ 23587628 (+) True cbx7a
XM_043235549.1 mRNA downstream 58120 23636361 ~ 23644540 (+) True st13
XM_043230902.1 mRNA downstream 77270 23655511 ~ 23661345 (+) True napsa
XM_043230858.1 mRNA downstream 95791 23674032 ~ 23681012 (+) True si:ch211-256m1.8
XM_043235475.1 mRNA downstream 104244 23682485 ~ 23684711 (+) True mpst
XR_006250499.1 other upstream 166084 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 411182 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 668203 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 1027690 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 1044838 22528989 ~ 22530060 (+) True G22344
unassigned_transcript_294 other downstream 257858 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 471998 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 472497 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 516783 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 855814 24434055 ~ 24439463 (+) True G22996

Expression Profile