RNA id: TU33845


Basic Information

Item Value
RNA id TU33845
length 1513
lncRNA type sense_over
GC content 0.43
exon number 2
gene id c1qtnf6a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 23709503 ~ 23721719 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACGCCATCTACAGCGACGACGTGGACATCTACATCACCTTTAACGGATACCTCATCAGACCGGAAACCGAGTGAGACCAGAAACGGGGGACGGGGGAGGAAGGCGAGGGTTTGAAAATGTGCCGAAGTGTTTGATCAGTGGAGCAGCTTTAACGAAACTGAAAAGCATCCAAACCGTTCATATTCGATTTCTGCAGTCCAAACTGAATCCCCTAATGCAGAGGAATCTGCTTTTTCTACTTCAGTGTGGGGTCTTGTGTGAAGAGAAGAGGGAAGGTTTCGGTCGGATTAGCAAAATGCTATTATATCACATTAGgacataaaactttaaaagctaGTATAGTATAAAACATCCTCAGCAGGCGTCGGCGGTAAACAAGATCCGAGCCTATCGTGCTTGGGCCGCTGTGGTTTGTTTTAAGCTTTAGCACTGTGTCATGTTGAGCAGTAGATCATTTCATTGGCTAGTTGGGTAGACATAGTTGTGAATTAATGAGGATTAGCTGACATGTAGTAACAAAGtgacttatagttagtagaatgtctaaagtggactatgaACATGAAGTGTAACATTTCGATAAATACGTAacaattcaaatgcattttagtgcaattttcatACATTACTGAAAATGTTTGGAGATCCTTTCATAGAAACACTGAGGAAAAACCACGTACCAGATGGCATGTAAGGAGAGAAATgtcattaaatcataaaaacattttatagccACAAAGCGGctaaagcattgtttttcagacaCCAAAGCAACAAAACTAGTTAAATAGTAAAACACAGTTGGCATTTTGTTATGGTCTGTCTGTGATCTGTtggaaattcataaaaaatgtgGAACTTGAAAACTGAATAACAAGCAGTTAAAGGTTTTGAAACTCTTTACCATCAGTTTCATTTCTTGCTTAAAAGCTACTTAGCTGCCCATTTGAAACGGACCTGCTTCTATTAATGTTCTTCTTTTGCATATGGGTTCTCCAGCAAGTAGCTATACTTCTCATAGTTGTCCAGCAGGTATTTTGGAGCATACATATGCTCTTTGGGGTGTGAGGGTGGGTAGTCTGGAGCAGACCCATCAAACCAACCCCCTGTCCGTATTAACTCTTTAATGTAACTTATCTTCCGCTTCTCGCCGTAATCGCCCCAACGTGGGAAGTCTCCATTTTGGGCCGATAAAAGTTTGTAGTAAATTCCTTCCGGTTTAAAACACCAAGAACAGTGCCATCCAGCGTAGTGAACTGGACTTCCGATGGCCCACGGCACCAGAATGCGCTCCCGTGGAGTTCTCATACTCCCGGAATCCCGACATGGAATAATACGACCGGCGCCGGAGATAGATCCCATCGCCCTTGTAAACCTTAAAGAGCATAGCGGTGGTGCAGGCGGACAAAATGTTCAGCGTTCCGAACTGCCTCCAGTAGAATCCGTAAAGAGATTTGCGCATGTGGATCCCGACCGGTTCTGCCCAGCCCTCGTAGAGCTTGAGGAAAAGAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU33837 lncRNA upstream 42236 23667905 ~ 23672990 (+) True G22800
TU33792 lncRNA upstream 69060 23578476 ~ 23646166 (+) False G22758
TU33791 lncRNA upstream 93572 23578476 ~ 23621654 (+) True G22758
TU33788 lncRNA upstream 136985 23574898 ~ 23578241 (+) True G22757
TU33784 lncRNA upstream 151980 23563040 ~ 23563246 (+) True G22754
TU33840 lncRNA downstream 32803 23754522 ~ 23755997 (+) True G22802
TU33856 lncRNA downstream 37024 23758743 ~ 23759342 (+) True G22816
TU33879 lncRNA downstream 80457 23802176 ~ 23805489 (+) True G22833
TU33911 lncRNA downstream 149076 23870795 ~ 23871177 (+) True G22857
TU33918 lncRNA downstream 164523 23886242 ~ 23886606 (+) True G22863
XM_043235515.1 mRNA upstream 9788 23696193 ~ 23705438 (+) False il2rb
XM_043235509.1 mRNA upstream 9788 23696196 ~ 23705438 (+) True il2rb
XM_043235511.1 mRNA upstream 9788 23696196 ~ 23705438 (+) False il2rb
XM_043235514.1 mRNA upstream 9788 23696196 ~ 23705438 (+) False il2rb
XM_043235510.1 mRNA upstream 9788 23696238 ~ 23705438 (+) False il2rb
XM_043234023.1 mRNA downstream 151412 23873131 ~ 23877674 (+) True mchr1b
XM_043234024.1 mRNA downstream 151413 23873132 ~ 23877674 (+) False mchr1b
XM_043235839.1 mRNA downstream 318183 24039902 ~ 24051913 (+) True LOC122342055
XM_043235831.1 mRNA downstream 330203 24051922 ~ 24056391 (+) True LOC122342045
XM_043235837.1 mRNA downstream 336974 24058693 ~ 24071844 (+) True zgc:171844
XR_006250499.1 other upstream 306412 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 551510 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 808531 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 1168018 22546158 ~ 22547208 (+) True G22329
TU33161 other upstream 1185166 22528989 ~ 22530060 (+) True G22344
unassigned_transcript_294 other downstream 114380 23836099 ~ 23836180 (+) True trnas-aga_1
TU34051 other downstream 328520 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other downstream 329019 24050738 ~ 24051863 (+) False LOC122342055
TU34076 other downstream 373305 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 712336 24434055 ~ 24439463 (+) True G22996

Expression Profile