RNA id: XM_043235839.1


Basic Information

Item Value
RNA id XM_043235839.1
length 2409
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC122342055
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24039902 ~ 24051913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GGAGTTGCTAGACTACATAGAGCAACAGTTTTACGCGTAGCAGACATGAAGGACCTTTCTAACTGACTCATCCATGTCATGTGGATGTTATCTGAGCTGTGAACCCCACCATGGAAGAAACATTCGGTGGCGTGTCCTCAGTCGTGGAGTCCAGCCTCTACCACACCGTCCATTCCATCCTCAGAGAGCTGGACTGTAAACCTCAGGCTGGATCAGTCTGCAATAAAGgcatGTTGAGATGGACCCTGCATAACAGGGTggacaaaaacccatcgatcagTGTCCCTCTTTTGAGGGTTCTCATAAAAGAGCTCGAAAAGGCGGAGAGAATCGATTCCAAGATTCGCATTATTCCTTTACTTCACACGCTTCTCTACACGGTCCTGCAGTCTCTATTTATTCCAGAAGATCTGTATCGGAGGATGTATTTTTGCCTGAAAAGTTTAGTTACTCTACCCGAACCCTACTGCTCAATCGCTCTCAACTACGCAAGACAGATGAAAATGGAACAAAACGCGCCAGgaaTGCTGTATCAGAGGAGAGTCAGCGCCGAACACAATCTATGCAATGATCTTTATCCGCTCCATGAGAAggtgtttgtgtttgtagacCCTGCCgtgtttcctctgtctctggtgAGCGCGCTCAAGGCCGACGTGGAGCGTGCGGACCCTGGCAGAAGCTCAATGATCTACAAGCGCAGAGTTTTACTGCACACAATGCTAGCTGCGTTAGGAAAGAAGTGCCAGGCTGGCCAGCTATCACAGTCTCTAGAGcatttaggTGAAGAGCTGGAGCTCCACTTCCAGGATCTCACCACCATCCTagaacagaaaacagaagatgCACCCTCTGACGATAATCAGTACAAAACTAGATTACTAGAGATCTACCAAGACATCCTGTCTGCTGCCAAAGatttgtcaTGTCCAGCCTCACAAGCAGAAACTCAGCTGCCCAGTCCTGAGGTCAGCTTCCACATCTGGACCAAAGAGGATGAGATATgGAACGAGCTGGTTAACTTTGCACTGATGGTTCCTGCGGACAGAAACTCTGCTTGTCTGGATGAGGATGAGCTGAAGCGCACCTCAGTCGTGTCCACCGTGTCCACGGACAGCGGCATAGAGGGAGACATGCCCATCAGCGAGCTCTCCTCCATGATGCTGGAGTCTCAGGGAGGCCCAGAGGAGCAGAGCAGCTCTCAGTCCTTCTGCAGGAGGCCGTGCGTGCGATGCCCCAAAGCTGGCAACCGAATGACGCTCATGATGGAGGCTATCAAGGGCAACGGAGCATACAGCCTCGGTAAAGAGGAAAGGAACCTCACCGCTCGGATCCTGGTAATGGGAGACGACAGAACGCTAGGACGGCTGGCCAGAACTCTGTTCGTGCTCAGGAAAAGGGAGGCGCGACATCTGCTGCTGACAAAGAAAGTGAACATGGAGATGTATTACATTCCGGTGACTGACCAGACGCTTTCTCCGTTCATCCAGGAAGGTGTTCCTGAAGACATGCTGACACTGGCAGGATATTTGGGAGGCTTGGATCCGTGGTACGACTGCAACATCAACAGTTTGGGAGCCATGATAATAAAACTGGCTCAGATgAAGTCAACTCAGAGCGAATCTTCAGACCCCAACACCTTCCTGTTAGATATCATCTCATACTACACGCGGCGTGTCAGTCAGCATCTGCACCTTCCCATCTACTCTGTCAAGATATGCTTCTCCAGCCTCAGTAGCACCACAGTGGAGGAGGTGTTTGTGGCCCAGCTCACAATGGACTTTCCCGAGGTCAAACGCTACAGAGCCACATTTAAAGACACGATTAAAGGTTCAAAAGCGTTACAAAAATACAACCCACAAGAATTTCATGGTGCAGTCGTGTCAATCAATTACAGAAAGgcCTCAATAAGTGACAGAGAAAAGGAGATGGGGATGTCTTTACCGACGAGTGGCATGTTGATCAGTGTCGTGCCTTCATGCAGAGTCAGAAGTCTGCACAGTGTCAGCATAAGTTTCCAAGATACGAATCCCACAAGGCCCAGCACACATTCAGTCAGAGCTGTTGGTGCCAATATCAGGGTTCTGGAGCAGCGGACATTCACAGTCTGCTTAGATAAAGACCCACGTAAAACATTCAAGAATGTCCAGAGCATTGAAGTTTCTCCATGCTTGGACCCGGGATACACTCACCAGCCGAGTGCAAAGTCCAAGTACAGTTTGGGAGATGGAGGTGAACCTCTGGGCAAATACGTGAACAAGACCCTCACGCTGCCGATCAACACCTTCTGTGGCACTGAGCAATGACGATACGCCTCCAATTTAGGATAGCAGAGCTTGAGTCACGAGACGAACTGAAACCTCATGCCTCTCAGAGGCTTTTAGTGTTTTTCGGGGCGTGTGCATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34016 lncRNA upstream 133645 23904175 ~ 23906257 (+) True G22921
TU33920 lncRNA upstream 147908 23891597 ~ 23891994 (+) True G22865
TU33918 lncRNA upstream 153296 23886242 ~ 23886606 (+) True G22863
TU33911 lncRNA upstream 168725 23870795 ~ 23871177 (+) True G22857
TU33879 lncRNA upstream 234413 23802176 ~ 23805489 (+) True G22833
XR_006250515.1 lncRNA downstream 29604 24081517 ~ 24083484 (+) True LOC122342062
TU34062 lncRNA downstream 29653 24081566 ~ 24082876 (+) False G22957
TU34065 lncRNA downstream 29653 24081566 ~ 24082800 (+) False G22957
TU34068 lncRNA downstream 29653 24081566 ~ 24082876 (+) False G22957
TU34072 lncRNA downstream 29653 24081566 ~ 24082983 (+) False G22957
XM_043234023.1 mRNA upstream 162228 23873131 ~ 23877674 (+) True mchr1b
XM_043234024.1 mRNA upstream 162228 23873132 ~ 23877674 (+) False mchr1b
XM_043230466.1 mRNA upstream 323326 23709503 ~ 23716576 (+) True c1qtnf6a
XM_043235511.1 mRNA upstream 334464 23696196 ~ 23705438 (+) False il2rb
XM_043235831.1 mRNA downstream 9 24051922 ~ 24056391 (+) True LOC122342045
XM_043235837.1 mRNA downstream 6780 24058693 ~ 24071844 (+) True zgc:171844
XM_043235833.1 mRNA downstream 32073 24083986 ~ 24094610 (+) True tom1
XM_043235834.1 mRNA downstream 86630 24138543 ~ 24142121 (+) True LOC122342047
XM_043235828.1 mRNA downstream 90903 24142816 ~ 24148359 (+) True LOC122342038
unassigned_transcript_294 other upstream 203722 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 631088 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 876186 23158249 ~ 23163716 (+) False prr15la
TU33451 other upstream 1133207 22905377 ~ 22906695 (+) False LOC122341356
TU33136 other upstream 1492694 22546158 ~ 22547208 (+) True G22329
TU34076 other downstream 43111 24095024 ~ 24097159 (+) True G22958
TU34141 other downstream 382142 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 394965 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 477628 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 669613 24721526 ~ 24809963 (+) False G23026

Expression Profile