RNA id: TU34053


Basic Information

Item Value
RNA id TU34053
length 1167
RNA type TUCP
GC content 0.54
exon number 3
gene id G22953
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24446878 ~ 24449289 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TTTGCCGTATGTGTCGTAATAGAGCACTTTGTGATGCTACAGTTCACGGTGACTTTTATCTACTCGAGCTAACGATCATTTTCTCCTTGACTCGTTTTCATTGGCCGGACAGTCGACAGCTGCAGAGCAATACCGCTCCAACTCGCTGCACTAAAGGTGCGGCGTGAAGCGCTCACGTGACTCGCGCTCTCCCGCTGTAAGTCGATCTTCTCGCCAACAGGGGGCGCGGTTAACCAGCGCGTGCTCGGTGCGCTGAGGCCGGCCATTGGCTGTTCGTCAAAGGGAAAGAAAACTTGTTACACTTTACCTGGATACGGCGCGGACGCGAAAGTCCGAAGAAAACATTAATCGACAACATCGTTTCAAGCAAACCATGAGTTCACGGACAGGCCGCGATAGATCTCAGaGCGCTAACTGAAGTCAACAAGCATGATGAAGAAGGGAGCAATGCAGAAGAGCAAGCAATGGAATGTAAAGGGAGCCTTGCGGCTAGCCGGCGTCTTCCACTTCCTCCATTCCTGCGGCTCCGGATGCCTCCTTCCCTTCCTGACCCTCTACTTCCGGCACCTAGGTCTCAGCGCCGCCATGATCGGCATCATCATGGCGTCCAAGCACCTGCTCGCTCTGCTGTGGCGCCCGTTTTCCAGCGTCCTCGCCCGGCAGTACGACAAGCGGCGGGCGGTTATAGTGTGCTCTCTGCTCAGCTCGGCCCTGCTGGTTTTGACTCTTCTGCTCTTCCCGTCCGCAGGAATCCAAGCTGAAAGCGGACGGTGTAACGCTAGTGAACCCGATGCCAACCCCACCCCTGTTCTCGAGAGGACGACCGTCCCATCGCAATCAAACGCTACCGTTTACTCAATAAACCAAACGTCTGTAAGCACCAAACAACCTGTCGAAGTAAGCTCCAACTGGACAGCAAGAGGCCTGCGATCCTTAAAGACGCCTGACCAGGAAGAAGATCCTCACACCGAGTTCCTGGGGAGCCTAAAAGTCATGGACGTCCAGCATCAGATGTTCTTTCTGGTTCTCATCGTAATGGGTTTGTGGGAGTTCACGGCCGCCCCGTTAGAGTGGACGGTGGATGATGGACTCTACGAATACTTGGATTTCGTAGACGCCACCGACCGTCATAACAGGGTTAAGGAACTACTCTGGAGTTTTACTCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34142 lncRNA upstream 9862 24434055 ~ 24437016 (+) False G22996
TU34134 lncRNA upstream 107224 24338871 ~ 24339654 (+) True G22990
TU34125 lncRNA upstream 210803 24233766 ~ 24236075 (+) True G22982
XR_006250518.1 lncRNA upstream 231904 24212347 ~ 24214974 (+) True LOC122342065
TU34085 lncRNA upstream 233597 24209568 ~ 24213281 (+) False G22959
TU34149 lncRNA downstream 108422 24557711 ~ 24558261 (+) True G23002
TU34152 lncRNA downstream 113523 24562812 ~ 24563127 (+) True G23005
TU34151 lncRNA downstream 113957 24563246 ~ 24563895 (+) True G23004
TU34158 lncRNA downstream 163237 24612526 ~ 24612751 (+) True G23011
TU34166 lncRNA downstream 165878 24615167 ~ 24638416 (+) True G23014
XM_043234709.1 mRNA upstream 72314 24369213 ~ 24374564 (+) True LOC122341365
XM_043235829.1 mRNA upstream 284636 24156356 ~ 24162242 (+) True LOC122342039
XM_043235828.1 mRNA upstream 298519 24142816 ~ 24148359 (+) True LOC122342038
XM_043235834.1 mRNA upstream 304757 24138543 ~ 24142121 (+) True LOC122342047
XM_043235833.1 mRNA upstream 352268 24083986 ~ 24094610 (+) True tom1
XM_043228408.1 mRNA downstream 71739 24521028 ~ 24524600 (+) True gcat
XM_043234711.1 mRNA downstream 75991 24525280 ~ 24530769 (+) True mcm5
XM_043228301.1 mRNA downstream 90034 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 96122 24545411 ~ 24549093 (+) True ankrd54
XM_043235408.1 mRNA downstream 99938 24549227 ~ 24557112 (+) False hmgxb4a
TU34141 other upstream 7415 24434055 ~ 24439463 (+) True G22996
TU34076 other upstream 349719 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 395015 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 395015 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 610698 23836099 ~ 23836180 (+) True trnas-aga_1
TU34113 other downstream 80252 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 272237 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 272237 24721526 ~ 24811577 (+) False G23026
TU34203 other downstream 534060 24983349 ~ 24985917 (+) False LOC122342019
TU34266 other downstream 962629 25411918 ~ 25447270 (+) False G23061

Expression Profile