RNA id: TU34076


Basic Information

Item Value
RNA id TU34076
length 1642
RNA type TUCP
GC content 0.37
exon number 2
gene id G22958
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24095024 ~ 24097159 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCTCTTTTGGacacaaatattttcttaaatatattaaacatacaaACAGCTGACTCAAAAACCTCAAAAATGTCTTCACTACCATCAAGAGCCATGCAAAACACACAATATCAGCTGCTTTTGTTggtagaaaatattttatatttaaatataaaagaaaatatttaagtggTTTTTTTTGGACATACATTGCAAGTCGGTGGTAACAAAAAGATATTTGCTTAccaacatttctcaaaaaaaaaaaaaaaaaaaaaaagtgacaaaaagtaTTGACAGAATTGAGTTTTTGGGCAAACTGTTCCTTTTAAGTCCGAAACAACATTCGGCTGGCCCAGACGAACTGTGGCAATTTCATCATACTCCTGTGTCGCGCAGTGAGGGAGATTCAAAGACAGCTGCTGATCCACAAAAATCTGATGCaataagaaaaactattttctatCACAGATAAAAACCCAAACCAGCGCACACTGATGATGTTTTATTCTTCTGTAGCAGCGCGTGCATCATATCGTACATAAGTTATAGACAAATTTATTAGGTCCATGTCACGTAGTTTGTCCTGCAATGATCTGAAAGGATTGATAAAATCGTGCAGTGTGTCTCAGGCTTAAGAGCTCAATTCATCAGCAGTAATGCAAtccattacataaaaacattgtaaGAGTAGTAGACCAATTAACTGACCAGCATAAAACCCAATGAAAATATACCAAAAGACATAAACTGTTGTCAGATTCACCACAGCAGGTCCGTTCTTTTCTCAATTAATGTGGATTATTATAAATGAGGGAATGGCAACCTCACCTTTCTCTCTAGAGGTGCATTCTCATCTGAGAGGAAACAAAGTTGGTACAAAACTTCTGAAGCAATGGACGAAATATGATTTCTGTATGAAAATAATCACGCACCACTTTTTTATGCTCCCATGCctgcatatttacattaaaactattaacaacagacaatatttgaaacaaaaatacctGTCTAAAATTGAAGGACACTTAAAATGTACAGCCGTTTGTTATCTTCAAGTTGGCCAGCTAATGATTGAATGCCTCCCTGCACCGACCAGATCAACCAACTTATGTCTGTTTGTGCATTATTGTCTTTGTCAGTTTGGCAAAAGTGAAGGTCATGCAGGCCGACATGTTGGTCAGATGATTTAAGAAGAAGCATATCCATCTTCTCAGTCTTTAATCCTGAACGTAGGTCCAAGAAGTTCTTGTTTGACTGGCAGCAAATCATTCAAATTCATTCATCTTTTAAATTCCTCCTCCTCGCTTAAAATCCGCCAACCGCTTCATAAAGGAAACAAAAACGCCTCTCTGATTAAATCGACGCATTCGGCATCCTCTTTCGTCGGTGCTTTTACCAGTAGGTCCATTGTACTGAATAAATCTCCGCTGTTTTAATAAAGAGAAGAGGTTTCCGCTCGGGCTCAAAGCCTCCAGTGTCCAGTGGATACGACAGATCTTCACAAGCTGCCCGTGGTTAGGAATTTTTAAAAGGTGAGACAACAAAAGGTGTCTCCCTTCATCATAATTTTTTGACTTGCTCAGTGAATGTATACTAGAAGTAAAGGCTTGTGTCAGTCATTCGTTTCTAAGTAATCTCGTTGCGCTGAGAGTTTCCT

Function

GO:

id name namespace
GO:0001067 regulatory region nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34073 lncRNA upstream 429 24091320 ~ 24094595 (+) True G22957
XR_006250515.1 lncRNA upstream 11540 24081517 ~ 24083484 (+) True LOC122342062
TU34072 lncRNA upstream 12041 24081566 ~ 24082983 (+) False G22957
TU34062 lncRNA upstream 12148 24081566 ~ 24082876 (+) False G22957
TU34068 lncRNA upstream 12148 24081566 ~ 24082876 (+) False G22957
XR_006250511.1 lncRNA downstream 3691 24100850 ~ 24107752 (+) True LOC122342058
XR_006250510.1 lncRNA downstream 3691 24100850 ~ 24107752 (+) False LOC122342058
TU34077 lncRNA downstream 3701 24100860 ~ 24101932 (+) False G22959
TU34079 lncRNA downstream 3701 24100860 ~ 24108140 (+) False G22959
TU34080 lncRNA downstream 3701 24100860 ~ 24101932 (+) False G22959
XM_043235833.1 mRNA upstream 414 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 23180 24058693 ~ 24071844 (+) True zgc:171844
XM_043235831.1 mRNA upstream 38633 24051922 ~ 24056391 (+) True LOC122342045
XM_043235839.1 mRNA upstream 43111 24039902 ~ 24051913 (+) True LOC122342055
XM_043234023.1 mRNA upstream 217350 23873131 ~ 23877674 (+) True mchr1b
XM_043235834.1 mRNA downstream 41384 24138543 ~ 24142121 (+) True LOC122342047
XM_043235828.1 mRNA downstream 45657 24142816 ~ 24148359 (+) True LOC122342038
XM_043235829.1 mRNA downstream 59197 24156356 ~ 24162242 (+) True LOC122342039
XM_043234709.1 mRNA downstream 272054 24369213 ~ 24374564 (+) True LOC122341365
XM_043228408.1 mRNA downstream 423869 24521028 ~ 24524600 (+) True gcat
TU34051 other upstream 43161 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 43161 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 258844 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 686210 23403441 ~ 23408814 (+) True LOC122341907
TU33550 other upstream 931308 23158249 ~ 23163716 (+) False prr15la
TU34141 other downstream 336896 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 349719 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 432382 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 624367 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 624367 24721526 ~ 24811577 (+) False G23026

Expression Profile