RNA id: TU34086



Basic Information


Item Value
RNA id TU34086
length 702
lncRNA type read_through
GC content 0.40
exon number 4
gene id G22959
representative False

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24100860 ~ 24213281 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


CATTTCCCGAAAACAATGTGCTCATGagaagttattaaaataacGGAGATTGAATCATATAAAGGAGTTACTGGCTAAAACAACGAACATGTCGATGAAGGCGATTTAATCCTGGAGAAATCCTCCTTCAAGAAACAGGGGAGGAACTTCAGCGAGAAGAGAGAAGAATAGGCTTCCGGACAGACCGAGACAGATTGAGATGAATTTATTGGAGCAGCAGACAAGAGCTCAGAAAAGACTCGAGTCAGCCTGATGATTGAATATTTCGAacaaatgcCCCCGGTTTGACCCTTTGACCCCTGACTGCAGTCAAGCACACAGTCCAGTCTGGAGATAGAGACGGACAGGCGACTGATGGAGGCTTCTTGGTCAAACATTATTATCATGTGTGTAAGATGTCTTTTATTCTTGTGATTTTAAGATCAACTTTAAGCCTGcggtcacacgatccttcagaaatcagaaaaagtggacgtttaaaataaaagtagggaaaaaaagaaaagcatttctctaaaataaaggtattttgtaacattatacatgtcTTTATCATCACTCGATCAATATAAAgcgtccttgctaaataaaagtagtaaTTTCTGTAAATGTCTGTCATTTTGACCCTTTCTTTCAGTGTGGCCTGGATGACTGGGGTTTCTCCTCAACTTGTGTCCAGACCCATCATTTCTGTTTTGTAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34073 lncRNA upstream 6265 24091320 ~ 24094595 (+) True G22957
TU34072 lncRNA upstream 17877 24081566 ~ 24082983 (+) False G22957
TU34062 lncRNA upstream 17984 24081566 ~ 24082876 (+) False G22957
XR_006250518.1 lncRNA downstream 1787 24212347 ~ 24214974 (+) True LOC122342065
TU34125 lncRNA downstream 23206 24233766 ~ 24236075 (+) True G22982
TU34132 lncRNA downstream 57866 24268426 ~ 24449870 (+) True G22988
TU34134 lncRNA downstream 128311 24338871 ~ 24339654 (+) True G22990
TU34142 lncRNA downstream 223495 24434055 ~ 24437016 (+) False G22996
XM_043235833.1 mRNA upstream 6250 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 29016 24058693 ~ 24071844 (+) True zgc:171844
XM_043235831.1 mRNA upstream 44469 24051922 ~ 24056391 (+) True LOC122342045
XM_043235839.1 mRNA upstream 48947 24039902 ~ 24051913 (+) True LOC122342055
XM_043234024.1 mRNA upstream 223186 23873132 ~ 23877674 (+) False mchr1b
XM_043234709.1 mRNA downstream 158653 24369213 ~ 24374564 (+) True LOC122341365
XM_043228408.1 mRNA downstream 310468 24521028 ~ 24524600 (+) True gcat
XM_043234711.1 mRNA downstream 314720 24525280 ~ 24530769 (+) True mcm5
XM_043228301.1 mRNA downstream 328763 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 334851 24545411 ~ 24549093 (+) True ankrd54
TU34076 other upstream 3701 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 48997 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 48997 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 264680 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 692046 23403441 ~ 23408814 (+) True LOC122341907
TU34141 other downstream 223495 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 236318 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 318981 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 510966 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 510966 24721526 ~ 24811577 (+) False G23026

Expression Profile