RNA id: XR_006250521.1


Basic Information

Item Value
RNA id XR_006250521.1
length 1120
lncRNA type inter_gene
GC content 0.42
exon number 5
gene id LOC122342068
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24122208 ~ 24123879 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAGGGGAGCGATTTGTGTTTGGTTGTTGCGCTCTCACGTTTGCTTTATTGGCTTCCATTTTGATTCTGTTTGTTTAGTTACCGTGTGTTAAGTTGTTTCTCTTTTGCATTTGTAAGAGCTTGATTATTGAACTGCATTCGTGCTGTGACTCGACTCTTGGGGTTCCGAGTTGAATTCTGTCCTACATCAACACATAGTGATGGGACTAGCTGAGCATGTCACGTGACGTACATTTTGCAACACACAGGGTAACATTTGTTTAATCACACTAGTTAGGGAGCgggggggtattccagaaagcttggttaacttaccatttgataaatcataacctctgggttgatttaccccaaacaggcataccatgagtatgtcggttccaaaacacctgagaagagttagTTTAATCAACCTCCAACTGGTTACCCAGAGTTAGTGCGCGTGCACGGTGCATgtagaaagacattttcaatggatcgccgatttcacgagtcaccatggaaactcaaAGCGGAAAAAAGAGAGCGGCGTATTTCACAGAGACAGAGTTGGaggttttaatgcatgcttatgAGGAGTTAaagccaataatattaaaaagaagcaatacagctgcatcagcGAAAGCAAGAGAGTTGGCTTGGCAAATAATAACCGACAGAGTGAATGCgtgtaatccttctggagccacaagaactttaagccaagtcacaaatgaaatgaaacacaaaaccattccgcaaaaggtaatatttgattacacaattactgaactattattataacaggatttagtatattcattcAGTCATGTAGCTAATAGAAAGAAGACTGAAGGCTCCGTCTGAGGAGCTGGCTCTGTCTCTTAATAAAGAGCATCCAGGGGCCAGTTCATCACACACAGCATGCACCACAAGTGATGAAATACACTGATGGACTCTccagaaagaacacagtctgtcacagacttgatgaagatgacgatgaaTAGACTacatctgctgtgacagaagtggaCAATGCTGGTAGATGCACTGAGAACATACCTAGGGGTTTGCCCACAGATGAGGGTCCTTCAACCTCAGCACACAATCTAAGCAGGGTAACAATTTGTGTccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34095 lncRNA upstream 1930 24116920 ~ 24120278 (+) True G22963
TU34079 lncRNA upstream 14068 24100860 ~ 24108140 (+) False G22959
TU34081 lncRNA upstream 14068 24102745 ~ 24108140 (+) True G22959
TU34083 lncRNA upstream 14068 24105162 ~ 24108140 (+) False G22959
XR_006250510.1 lncRNA upstream 14456 24100850 ~ 24107752 (+) False LOC122342058
TU34101 lncRNA downstream 9847 24133726 ~ 24516998 (+) True G22968
XR_006250519.1 lncRNA downstream 72979 24196858 ~ 24198029 (+) True LOC122342066
XR_006250522.1 lncRNA downstream 74348 24198227 ~ 24205735 (+) True LOC122342069
XR_006250517.1 lncRNA downstream 77226 24201105 ~ 24202976 (+) False LOC122342064
TU34123 lncRNA downstream 77226 24201105 ~ 24203008 (+) True LOC122342064
XM_043235833.1 mRNA upstream 27598 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 50364 24058693 ~ 24071844 (+) True zgc:171844
XM_043235831.1 mRNA upstream 65817 24051922 ~ 24056391 (+) True LOC122342045
XM_043235839.1 mRNA upstream 70295 24039902 ~ 24051913 (+) True LOC122342055
XM_043234024.1 mRNA upstream 244534 23873132 ~ 23877674 (+) False mchr1b
XM_043235834.1 mRNA downstream 14664 24138543 ~ 24142121 (+) True LOC122342047
XM_043235828.1 mRNA downstream 18937 24142816 ~ 24148359 (+) True LOC122342038
XM_043235829.1 mRNA downstream 32477 24156356 ~ 24162242 (+) True LOC122342039
XM_043234709.1 mRNA downstream 245334 24369213 ~ 24374564 (+) True LOC122341365
XM_043228408.1 mRNA downstream 397149 24521028 ~ 24524600 (+) True gcat
TU34076 other upstream 25049 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 70345 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 70345 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 286028 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 713394 23403441 ~ 23408814 (+) True LOC122341907
TU34141 other downstream 310176 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 322999 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 405662 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 597647 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 597647 24721526 ~ 24811577 (+) False G23026

Expression Profile