RNA id: TU34101


Basic Information

Item Value
RNA id TU34101
length 770
lncRNA type read_through
GC content 0.35
exon number 2
gene id G22968
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24133726 ~ 24516998 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cctaaaatataataataatattaataagaataatgataataatattagacACATACCAGAGTGATCAGTCACAAGGTTACACAGGAGTCTCCAGACTCTTACTAGTGGCCTCCACACGCATTCAAACACAGTACCTGcagtacactttattttaatatactttacaGTCAGGTGTCTGCAACTATTGCAAAGCAGAGCTTAAAGAAACTcgcacatatacagtatacacacatatatgcatatatcatatataaacatcatatatatatatatatatatatatatttcagtttaatatgTTAAACCAATGTTTATTATTGATCATTTCTCTCTCGCTGAAACCTACAGCCATTCTATCCGTGCAGCAACTGATGGAGAAGGGGGTCGTTTCGGTGCTGTTGGGCGTACTGttatatagaaataaacttTCTTGAGTCTCGTCTTGCCTctcaaaaacctttaaattatCTGGTTGTAATTTAGTGAAAGCATACGCATGATTCCTGACACTGAGCTAATGAACCTTAAGTTCTGTAAGTGGCGAATTCACAAAAACCCGGTGGTCCTAGAACCGAGCTCGAGAAACTCCGAAGAGTCCGACGACGCACAGCAGgttgtttgaattaaaaaaaaaaaaaaaggttctcaGCTCCAAAATAGTTTATCTATAGCCTGTATAAATACGTTACAGCGGGtagaaaacagaacagaaattaaaaaaaaaaaaaaagtgccatcGAGCCTGTATCACAAAAGAAACGGCAATTAAA

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250521.1 lncRNA upstream 9847 24122208 ~ 24123879 (+) True LOC122342068
TU34098 lncRNA upstream 9869 24123187 ~ 24123857 (+) False LOC122342068
TU34095 lncRNA upstream 13448 24116920 ~ 24120278 (+) True G22963
TU34079 lncRNA upstream 25586 24100860 ~ 24108140 (+) False G22959
TU34081 lncRNA upstream 25586 24102745 ~ 24108140 (+) True G22959
TU34149 lncRNA downstream 40713 24557711 ~ 24558261 (+) True G23002
TU34152 lncRNA downstream 45814 24562812 ~ 24563127 (+) True G23005
TU34151 lncRNA downstream 46248 24563246 ~ 24563895 (+) True G23004
TU34158 lncRNA downstream 95528 24612526 ~ 24612751 (+) True G23011
TU34166 lncRNA downstream 98169 24615167 ~ 24638416 (+) True G23014
XM_043235833.1 mRNA upstream 39116 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 61882 24058693 ~ 24071844 (+) True zgc:171844
XM_043235831.1 mRNA upstream 77335 24051922 ~ 24056391 (+) True LOC122342045
XM_043235839.1 mRNA upstream 81813 24039902 ~ 24051913 (+) True LOC122342055
XM_043234024.1 mRNA upstream 256052 23873132 ~ 23877674 (+) False mchr1b
XM_043228408.1 mRNA downstream 4030 24521028 ~ 24524600 (+) True gcat
XM_043234711.1 mRNA downstream 8282 24525280 ~ 24530769 (+) True mcm5
XM_043228301.1 mRNA downstream 22325 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 28413 24545411 ~ 24549093 (+) True ankrd54
XM_043235408.1 mRNA downstream 32229 24549227 ~ 24557112 (+) False hmgxb4a
TU34076 other upstream 36567 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 81863 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 81863 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 297546 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 724912 23403441 ~ 23408814 (+) True LOC122341907
TU34113 other downstream 12543 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 204528 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 204528 24721526 ~ 24811577 (+) False G23026
TU34203 other downstream 466351 24983349 ~ 24985917 (+) False LOC122342019
TU34266 other downstream 894920 25411918 ~ 25447270 (+) False G23061

Expression Profile