RNA id: XM_043234711.1


Basic Information

Item Value
RNA id XM_043234711.1
length 2358
RNA type mRNA
GC content 0.55
exon number 23
gene id mcm5
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24525280 ~ 24530769 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCAGAGGTTTTGCCGCGAAATCAAGCGCGCGCGTAGCACGGGGGCGCACGGTTCTTTCTCGTCTGCAACGTTATAGCGGTAGTTAAGCTCAGCGAAGACAGCACTTGTTTAAGTAACACCGTATTGATCGTTTATTACAAGGAATATTAGCAGAATGTCGGGGTTTGACGATCCAGGAGTTTATTACAGTGACAGTTTTGGAGGAGGCGAAGGCTTCGGCGATGAAGGGGTCGTGAAACGCAGTCAGATCAAAAAGAAGTTCCGTGAGTTGAGGCAGTTCAGAGTGGGCACCGATCGCACCGGATTCACCTACAAATACAGAGATGAACTCAAGAGGCACTATACTTTGGGAGAGTACTGGATTGAGGTGGAAATGGAGGATTTGGCCAGTTTTGATGAAGACCTGTCAGACTGTCTGTATAAATTGCCTACTGAGAACCTGCCTTTGCTGGAGGAGGCGGCGCAGGAAGTGGCCGATGAGGTCACACGTCGGCCCGTAGGAGAAGAGTCTGTGCAGGACATACAGGTCATGCTGAAGAGCGACGCTCACCCGGCCTCCATCCGCAGCCTGAAATCGGAGCAGGTGTCGCGTCTCGTGAAGATTCCCGGTATTATCATATCCTCGACGGCTGTGAGGGCCAAAGCCACCAAAGTGTGCCTCCAGTGCCGCGGATGCAAAGCAGTCATCAGCAACATTCCTCTGCCGGGACTGCAGGGATACGCTCTGCCCCGCAAGTGCAACACGGAGCAGGCGGGCCGTGTCAAGTGCCCCGTGGATCCGTACTTCATTATTCCGGACAGATGCGTGTGTGTGGATTTCCAAGCGCTGCGCCTGCAGGAAGCTCCTGATGCCGTTCCACACGGAGAGATGCGACACATGCAGCTCTACTGCGACAGGTACTTGTGTGACCGTGTAGTACCAGGAAACAGAGTAACAGTCATGGGCATCTACTCCATCAAGAAAGTGGCGCAGACCAAGGCCAAAGGTCGTGATAAGGGAGCAGGTGTGGGCATCCGGTCAGCGTGCCTCCGCGTGGTCGGCATTGAAGTGGACACCGAAGGAGCAGGACGTGGAGCCACTGGTTCAGTTTCTCctcaggaggaggaggagttaAGGGCTCTGGCTTCGTCTCCGTCCATCTACGACTCCCTCGCTCGCTCTCTGGCCCCGTCCATCTATGGCAGCGATGACCTGAAGAAAGCCATAGCCTGTCTCCTGTTTGGGGGCTCCAGGAAGAGGTTGCCTGATGGTTTGACACGCAGAGGTGATATAAACCTGTTGATGTGGGGGAGATCTCGCACGGCCAAGTCACAGTTGCTGAAGTTTGTGGAGAGATGTTCTCCGATTGGGGTCTACACGTCTGGTAAAGGCAGCAGTGCAGCTGGTTTGACCGCCTCCGTGCTGCGAGACCCCAGCACCCGAGGTTTCGTCATGGAGGGTGGTGCCATGGTGCTGGCTGATGGAGGAGTGGTCTGCATTGACGAGTTCGACAAGatGAGAGAGGATGACCGGGTCGCCATCCACGAGGCCATGGAGCAGCAGACCATTTCTATTGCAAAGGCTGGCATCACCACCACTCTGAACTCCCGCTGCTCCGTACTGGCCGCCGCCAACTCCGTGTTCGGCCGCTGGGATGATACAAAAGGAGAGGACAACATAGACTTCATGCCCACCATTCTGTCTCGATTCGACATGATCTTCATCATCAAAGACCAGCACGACCAGCAGCGAGACATGACCTTGGCCCGGCACGTGATGAACGTTCACCTGAGCGCTCAGATGCAGACGGAGGGAGTCGAGGGAGAGATTCCTCTGGCCACGCTGAAGAAATACATCGCCTACAGCAGAACGAAATGTGGACCGTCTGTCGCGGCCGCCCGCGAGAAACTGAAGAACAGGTGCGTGCTGATGAGGAGTGGAGCGAAGGAACACGAGAGAGAGACCGACAGACGCGTGTCCATCCCCATCACTGTCAGGCAGCTCGAGGCCGTGGTGCGTATTGCAGAGTCTCTCGCTAAGATGAAGCTGCAGCCCATCGCTGGAGAGGAGGAGGTGGATGAGGCTCTCAGACTCTTCCAGGTGTCCACGCTGGACGCGGCTCTGTCCGGGAGCCTTTCCGGTGTTGAAGGATTTACTTCTCAGGCGGATCAGGAAATGATCTCTCGCATAGAAAAGCAGCTGAAGAGACGCTTCGCCATCGGCTCCCAGGTGTCTGAACACAGCATCATACAGGACTTCACCAAACAGAAATATCCAGAACACGCCATTCACAAAGTCCTTCAtttgatgatgaggaggggcgAGCTGCAGCACCGCATGCAGAGGAAGGTTTTGTACAGGGGTCAATGGAAGTAA

Function

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0032508 DNA duplex unwinding biological_process
GO:0006270 DNA replication initiation biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0009790 embryo development biological_process
GO:0042555 MCM complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003678 DNA helicase activity molecular_function

KEGG:

id description
K02209 MCM5, CDC46; DNA replication licensing factor MCM5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34101 lncRNA upstream 8282 24133726 ~ 24516998 (+) True G22968
TU34132 lncRNA upstream 75410 24268426 ~ 24449870 (+) True G22988
TU34142 lncRNA upstream 88264 24434055 ~ 24437016 (+) False G22996
TU34134 lncRNA upstream 185626 24338871 ~ 24339654 (+) True G22990
TU34125 lncRNA upstream 289205 24233766 ~ 24236075 (+) True G22982
TU34149 lncRNA downstream 26942 24557711 ~ 24558261 (+) True G23002
TU34152 lncRNA downstream 32043 24562812 ~ 24563127 (+) True G23005
TU34151 lncRNA downstream 32477 24563246 ~ 24563895 (+) True G23004
TU34158 lncRNA downstream 81757 24612526 ~ 24612751 (+) True G23011
TU34166 lncRNA downstream 84398 24615167 ~ 24638416 (+) True G23014
XM_043228408.1 mRNA upstream 680 24521028 ~ 24524600 (+) True gcat
XM_043234709.1 mRNA upstream 150716 24369213 ~ 24374564 (+) True LOC122341365
XM_043235829.1 mRNA upstream 363038 24156356 ~ 24162242 (+) True LOC122342039
XM_043235828.1 mRNA upstream 376921 24142816 ~ 24148359 (+) True LOC122342038
XM_043235834.1 mRNA upstream 383159 24138543 ~ 24142121 (+) True LOC122342047
XM_043228301.1 mRNA downstream 8554 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 14642 24545411 ~ 24549093 (+) True ankrd54
XM_043235408.1 mRNA downstream 18458 24549227 ~ 24557112 (+) False hmgxb4a
XM_043235409.1 mRNA downstream 18868 24549637 ~ 24557112 (+) True hmgxb4a
XM_043235410.1 mRNA downstream 19993 24550762 ~ 24557112 (+) False hmgxb4a
TU34053 other upstream 75991 24446878 ~ 24449289 (+) True G22953
TU34141 other upstream 85817 24434055 ~ 24439463 (+) True G22996
TU34076 other upstream 428121 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 473417 24050239 ~ 24051863 (+) False LOC122342055
TU34183 other downstream 190757 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 190757 24721526 ~ 24811577 (+) False G23026
TU34203 other downstream 452580 24983349 ~ 24985917 (+) False LOC122342019
TU34266 other downstream 881149 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 914530 25445299 ~ 25447270 (+) False G23061

Expression Profile