RNA id: TU34123


Basic Information

Item Value
RNA id TU34123
length 1829
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id LOC122342064
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24201105 ~ 24203008 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GACCGATCACTCTGGTATGTgtctaatattattatcattattcttattaatattattattatattttaggcTAGTTATTGTATATACAATTTTCAAGTTATTGTACATTGTTAATTCATAGTTGTAAATacgcataattttttttatttatgcagttcTATAGACAGCACTAAATGCACATGTCTGTTTATAGGTCCTCTGTTCTATTCCagatgcatactttttttttttccttttctttagtcATGTTTAAATGTTCTTGTATTTCCttttcatatatgtgtgtgtaccgAGAGCTGGCACATAAACTGTAAAACCACAACAAGTGGTTACAGTGTTTTTGCGCACACTTGGCGAATAAAGCTCCTCCTGATTCAGATTCTAACCTAAAATGCTTTACAGTCCGTTTAACTTGCAGTGTTTGTTCTTGTTATAAAAtcaacacaattaaaaacaaagtaatttCTATATACGTGTCTTACCAGAAATAAAACTTTCAGAAGAGGAAACCGAACCAGTGTCTGTGATCACCCGTGTCCCAAGCTCTGTCCATCCTTGGTTTGAGAGTTATGGAGAAGATGATGGAGTTTTGTATGGAGGGGAGCACATCTTCACTTTCACTCTCCAGGCATCTGAAGGACAAGACTTTCCCAAAAGGCCCAAAAAACTGTGATGGACATTTACTTCCAGTTCATTTGTTACACctgtaatgaaaaaatgtatcaagcacttgataatgttattttagcaaCACTTATGAATATTCAGGCTTTTTgagtattcatttttattgcttgcaaacttttttttaccattttaaatcaCAGATTTAGATCAACCGTGCTGTTGTaggcaacaaaaacaacactgagcTTTAGCAATGTGCATAAAAACTGGACAATGGTGACGTATTTTTGTAGGCCACCCCCCGAAGTCCCTGCTTCCTATGACCAAAACCTCACTGGACTCTTCCAACTGACTTTTGGACTATTGCAGAGAATTGACAAAGGTTTCTAATTCTTGCATTTTGTTTATCGTGATAATCTTCACAAATTGCAATGAGCAGAAGTAAAAAGCTGTAAGTGTGAGCTATAAATGAACTAAACCGTGGTCGCATGCCTTCACCGTCACCATCACGATCTCCTCACGACTGAAGTCTTTATAATTAGTCCTTGGGTTTGCTTAGTTTTCTTTGGTTTAATGCTTTAGAGCAGGGGCGGCAACCTTTTTTATCAAAAGAGCCACTTTGTTTCATGTTGCAAAAGTAAGTTTGTCGGGTTGGCGTAGTTTTTCCATATCACTCCATTTGTGCTCTTTAGCGAGAGCAGCCCTCTGACGGGCGACTTCTTCAAGATCCGCTGACAGGGATTTGAACTTGTTACCCCCAAAAGCAGATGCAAAAGCAGATGTGCACGCTGCATTAAACTCTCTATTTTCTTCCGACACTTTTCTTTTTGGGCTCTTTTCATGCTTACAGTGGTAGGGGTTCCGCGTGGTCCCGCCAGCAAGTAAAGGCGACGACTGCTGACGTTGATGTGACATATATTTTAAGtgacaaattataaaaaaaaaaaaactttattagatGGTATCAACTAAAACCCCAGAGGATTTGTGCAACAGAGCCGCAGGTTGCCTACCCCTGCTTTAGAGTATTAAAGCACTTTGGTCCACATTAAAGGTTccgatgtttatttttttgtattgccAATTTACAAACGCTTTTGGGaatttttcatgtaaaatgtattttagatcaTTATTTCCTTTGTTAAATGGCACAGCTGAAACTGTAaggaatgtatattttaaatgaatgtaaataaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250519.1 lncRNA upstream 3076 24196858 ~ 24198029 (+) True LOC122342066
XR_006250521.1 lncRNA upstream 77226 24122208 ~ 24123879 (+) True LOC122342068
TU34098 lncRNA upstream 77248 24123187 ~ 24123857 (+) False LOC122342068
TU34095 lncRNA upstream 80827 24116920 ~ 24120278 (+) True G22963
TU34079 lncRNA upstream 92965 24100860 ~ 24108140 (+) False G22959
TU34078 lncRNA downstream 6560 24209568 ~ 24210560 (+) False G22959
TU34085 lncRNA downstream 6560 24209568 ~ 24213281 (+) False G22959
XR_006250514.1 lncRNA downstream 6566 24209574 ~ 24210462 (+) True LOC122342061
XR_006250518.1 lncRNA downstream 9339 24212347 ~ 24214974 (+) True LOC122342065
TU34125 lncRNA downstream 30758 24233766 ~ 24236075 (+) True G22982
XM_043235829.1 mRNA upstream 38863 24156356 ~ 24162242 (+) True LOC122342039
XM_043235828.1 mRNA upstream 52746 24142816 ~ 24148359 (+) True LOC122342038
XM_043235834.1 mRNA upstream 58984 24138543 ~ 24142121 (+) True LOC122342047
XM_043235833.1 mRNA upstream 106495 24083986 ~ 24094610 (+) True tom1
XM_043235837.1 mRNA upstream 129261 24058693 ~ 24071844 (+) True zgc:171844
XM_043234709.1 mRNA downstream 166205 24369213 ~ 24374564 (+) True LOC122341365
XM_043228408.1 mRNA downstream 318020 24521028 ~ 24524600 (+) True gcat
XM_043234711.1 mRNA downstream 322272 24525280 ~ 24530769 (+) True mcm5
XM_043228301.1 mRNA downstream 336315 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 342403 24545411 ~ 24549093 (+) True ankrd54
TU34076 other upstream 103946 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 149242 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 149242 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 364925 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 792291 23403441 ~ 23408814 (+) True LOC122341907
TU34141 other downstream 231047 24434055 ~ 24439463 (+) True G22996
TU34053 other downstream 243870 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 326533 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 518518 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 518518 24721526 ~ 24811577 (+) False G23026

Expression Profile