RNA id: TU34141


Basic Information

Item Value
RNA id TU34141
length 1434
RNA type TUCP
GC content 0.46
exon number 9
gene id G22996
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24434055 ~ 24439463 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagagagagagagagagagagaaagacagcatTTGAATGTGAAGCGCAGTGAAgtgcctgtttctttcttttagcgCAGGTAGGAACCAATACAGATGATCTAAGAGGAAGCCGGTTGAATTGTTAGGATTATTGGAGTTGCCAGACTACATAGAGCAACAGTTTTACGCGTAAAAGACATGAAGGACCTTTCTAACTGACTCATCCATGTCATGTGGATGTTATCTGAGCTGTGAACCCCACCATGGAAGAAACATTCGGTGGCGTGTCCTCAGTCGTGGAGTCAGCCTCTACCACACCGTCCATTCCATCCTCAGAGAGCTGGACTGTAAACCTCAGGCTGGATCAGTCTGCAATAAAGgcatGTTGAGATGGACCCTGCATAACAGGGTggacaaaaacccatcgatcagTGTCCCTCTTTTGAGGGTTCTCATAAAAGAGCTCGAAAAGGCGGAGAGAATCGATTCAAGATTCGCATTATTCCTTTACTTCACACGCTTCTCTACACGGTCCTGCAGTCTCTATTTATTCCAGAAGATCTGTATCGGAGGATGTATTTTTGCCTGAAAAGTTTAGTTACTCTACCCGAACCCTACTGCTCAATCGCTCTCAACTCATAAGACAGATGAAAATGGAACAAAAGCGCGCCAGGTAATACATGCCGTCAgactaaaaccataaaagcaTCTCACTGTGAATTCAGCTGGGATGCTTTCCATGTAACCAATTGTTAAACTGGATTTTTGGAGTTTCTTTTTCAGTAAGATGCACTCATTCGTGTGAGGAGACAGCATGTTTGGATACAGTTCATCTAGATCAGATTTAAGGCTTTCGGGAGATAGAACCCAAATATGCTGTGATCGATGCTAGcatattcataaacacattCAATTCGGTGGAAATCCCATCCTGCAACATTCTCCggtgctgtttttaatttattttaggaaTGCTGTATCAGAGGAGAGTCAGCGCCGAACACAATCTATGCAATGATCTTTATCCGCTCCATGAGAAggtgtttgtgtttgtagacCCTGCCgtgtttcctctgtctctggtgAGCGCGCTCAAGGCCGACGTGGAGCGTGCGGACCCTGGCAGAAGCTCAATGATCTACAAGCGCAGAGTTTTACTGCACACAATGCTAGCTGCGTTAGGAAAGAAGTGCCAGGCTGGCCAGCTATCACAGTCTCTAGAGcatttaggTGAAGAGCTGGAGCTCCACTTCCAGGATCTCACCACCATCCTagaacagaaaacagaagatgCACCCTCTGACGATAATCAGTACAAAACTAGATTACTAGAGATCTACCAAGACATCCTGTCTGCTGCCAAAGatttgtcaTGTCCAGCCTCACAAGCAGAAACTCAGCTGCCCAGTCCTGAGGTCAGCTTCCACATCTGGACCAAAGAGGATGAGATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34134 lncRNA upstream 94401 24338871 ~ 24339654 (+) True G22990
TU34125 lncRNA upstream 197980 24233766 ~ 24236075 (+) True G22982
XR_006250518.1 lncRNA upstream 219081 24212347 ~ 24214974 (+) True LOC122342065
TU34085 lncRNA upstream 220774 24209568 ~ 24213281 (+) False G22959
TU34086 lncRNA upstream 223495 24100860 ~ 24210560 (+) False G22959
TU34149 lncRNA downstream 118248 24557711 ~ 24558261 (+) True G23002
TU34152 lncRNA downstream 123349 24562812 ~ 24563127 (+) True G23005
TU34151 lncRNA downstream 123783 24563246 ~ 24563895 (+) True G23004
TU34158 lncRNA downstream 173063 24612526 ~ 24612751 (+) True G23011
TU34166 lncRNA downstream 175704 24615167 ~ 24638416 (+) True G23014
XM_043234709.1 mRNA upstream 59491 24369213 ~ 24374564 (+) True LOC122341365
XM_043235829.1 mRNA upstream 271813 24156356 ~ 24162242 (+) True LOC122342039
XM_043235828.1 mRNA upstream 285696 24142816 ~ 24148359 (+) True LOC122342038
XM_043235834.1 mRNA upstream 291934 24138543 ~ 24142121 (+) True LOC122342047
XM_043235833.1 mRNA upstream 339445 24083986 ~ 24094610 (+) True tom1
XM_043228408.1 mRNA downstream 81565 24521028 ~ 24524600 (+) True gcat
XM_043234711.1 mRNA downstream 85817 24525280 ~ 24530769 (+) True mcm5
XM_043228301.1 mRNA downstream 99860 24539323 ~ 24545214 (+) True foxred2
XM_043235412.1 mRNA downstream 105948 24545411 ~ 24549093 (+) True ankrd54
XM_043235408.1 mRNA downstream 109764 24549227 ~ 24557112 (+) False hmgxb4a
TU34076 other upstream 336896 24095024 ~ 24097159 (+) True G22958
TU34051 other upstream 382192 24050239 ~ 24051863 (+) False LOC122342055
TU34052 other upstream 382192 24050738 ~ 24051863 (+) False LOC122342055
unassigned_transcript_294 other upstream 597875 23836099 ~ 23836180 (+) True trnas-aga_1
XR_006250499.1 other upstream 1025241 23403441 ~ 23408814 (+) True LOC122341907
TU34053 other downstream 7415 24446878 ~ 24449289 (+) True G22953
TU34113 other downstream 90078 24529541 ~ 24530563 (+) False mcm5
TU34183 other downstream 282063 24721526 ~ 24809963 (+) False G23026
TU34186 other downstream 282063 24721526 ~ 24811577 (+) False G23026
TU34203 other downstream 543886 24983349 ~ 24985917 (+) False LOC122342019

Expression Profile