RNA id: XM_043235812.1


Basic Information

Item Value
RNA id XM_043235812.1
length 3139
RNA type mRNA
GC content 0.50
exon number 16
gene id LOC122342019
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 24983281 ~ 24993218 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GAAGAACCGCGTGATCAAACTCAGCCCTCCGCTGATTGGTCGGCTGGCTTGGCGCAGGAGGGTCGTCAATAAACCTGCTAAATCTGCGAAATACAATTTACACGTGAAGCCAGTTCGAGCCTGTCAGCCCTAGTCAGAGGGGGTTTGGCGACGGTGACTCGATCGACGAAAGTCAGACTTGTATCCAAAATCCACGAGGACCCGAAAGGAAGAGGATTACGGGAAATAGAGCGCGCTCGTTCCAGGATGCCGAAAGCGACGTTAGCGTTCGTGTTAATTCGTGGGAGCGAGTGGCGGCTGTGAAAAGCGCCGTCTCGCGGGACGCCGATGTCACTCTGGAGGGGAGCACGCAAATGTCTGGTGACCGCGGACTTTCCGTGACTCCGGTCGCTCGGCTAACGGGACGTTGCGTCACACGCGGGAGCCGCGAGCGATGGCACGGCGCGCTATTACTGTAACGTTACTCTGCTTGTGGATATGTTCTCGAGtctcttGTGAAGTGGATGTGAACTGCTGGTGGAACGAGGCTCTTGCCGTGGGCCACAATGTGTCTGTTCTGTGCCACATGAGTTCACGGGGAAGGACGGACAGCTGTGGGCTCTGCCAGCTTTATGTTATCATACTGGGCCACAGACATGAGTTTCCGAGCACATGTGCCAATACCAAAGAAACCTTCAGCTTTTCTATCGCAGCGGAACACAGAGAGAGTGTTCGGTGCCTGTGTAACAGGACAGCTTCAGATGGCTGCAGCGTTACAGTAAGAGGAGGCTATCCGCCATCCCCCCCGTCTCCGCCTGATTGTGCTATTGAAGACTTGGAAGATGAAGACATTTACTGCTCTTGGTCTAAATCCAACGAGCCGACGATTCCAACTGTGTACACCCTTCACTGGAAAGATTATGATGGGAAGGTTAAATCTACGGAAAGCAGTATTGACAGTGCAGTCATAAACCGGCGTGACTATATGAAAAGCACTGACATCACAGCATGGGTCACTGCCAAAAACAGGCTGGGTTCTGCACGCTCTGAGAGGTCTTTCTTCAACACAGGCCATATAAAACGACCAGACACCCCTTACAATATAAACCTCACCTCTGAATCAGTGGAGTTCAGTTGGGACATGGACTGTGACACAGTGGGCTACTTGGACAAGAGCTGTCAAGTACAGTATCGGGCGCACGATCGTATTCTGGACTGGATTGAGGTGGATGATTGCCAGGTCATGTTTGTGTTAAAGGATCCCCAGCCGTTCACGCAGTACAGTTTTCGTGTTCGCTGCCACTGTGGATATGAAGAGAGGGTCATGAGTAACTGGAGCTCGGTTTATTCGATCAGGACGCCCCCTGCAGcACCGGTTGGACAGCTGGATGTTTGGAGTGACTGCGGCCCTAATTCTGACGAGTCGTCCTGTAACGTCTATTGGAAGGAAATGCCCCCGTCTCAGGCTAGAGGGGAAATTACTAACTATATTGTAACTGTGAAGCTTAAAAATGGCACCGAGGTCAAGCAGCAGGTCCCCAGGCCATGGAGAGACGCCGGAGGTCAGAGCTGCCGGCAGCTCAAATACTACCTCAAGCCAGGCGTTGTTGGAGTGTTTGTGTCAGCCAACACCTCAATGGGCACATCGGACCCCACATGCATCCTGTTTGCTGAGAGGGGGCCGAGAATGCCTGAGGTGAATCTGAGCGTAATCGGTGAGATCCAGGCGCTGCGGGTCTCATGGTCCATACACCCTCACTTCTCTGAGAGCGTCCTGGAATATGTGGTGCAGCACGTGTCTGTAGTACCTGACTCTCTGTGCCTGAACTGGGTCAGAGTGAAGAGGACCCGGACATCTGTCACactcacagGTGACTTCTGGAACTACACAGCTTATAATGTGTCTCTGTTTGCGGTCTTCAACAACCACAGCACTTTCCTCAAGTCAGCAATTGCATACACACTTGAAGGAGTTCCTCCTAAAGTCTCTCAAATCAGCGTGAAGAACATCACTTACTCCTCTGCCACTTTGGTCTGGAGCCCCATCCCTGTAAATGAGAGCAAGGGTGTCGTCCTGCATTACTTAGTGGGCGTCAAAGAAACAGGGTCTAATATAAGCAGTCACCGAACCAGCGTGCAGCTGTCAGAACTGCAGCCTGCCCAGCTGTACCACGTCTGGGTGAGCGCTGTGAGCGCTGCTGGCGAAGGGGACAAGCTCTTGGCCACGTTCTCCACCAGCAGAGAAAACAGTAACGATACCCTGTTGGTTGTACTTATAATGTTGATGTCCCTggtcttatttgtttttgtttttatgttggtGTACAAACCAACCTGGTGTTTTGTGAAAATCCCGGATCCaattaacagtaaaacatttaagcatatGAACTTCCAGCACGCGTGGCCACGGTTCTGTTCTCCTTCCGAACTGAATATAAAGATCTCCGAGCTGGAGATCATAGAGAAGCTGGATCGCGACACGCCTGCTCCTCAATCAGAGACCGAACCGGAGAACGCTTTCATCGATATGGATCCCCAACATTTTGAGCTGCCAAATGGACTGGACGGAACGAATGAAGGTGGAGGAGAGCCTGAGGAAGAGCCTGGGGAATCAAACGGGagaagcattttaaagcatgagCGCTGGGCGAAGGAATACAGCGAGATGGTCGACACTGATGAAGAGAAGGATGGCGCTGATGAGGAAGAGTGGTGGGACCAGCAGTGTGTCTCAGACTATGAAAGGCATTTTTTGCCTTCTGTTGCAGCGAATTAACTTTTCGTACCTCTGTACTGAAGTGTCTTAACTCAAACAATCAGAGAGTGACTGTTTTACTAAAGAACGAGGTGTGCTTTTTAATCAGACACTGAAAAGAGTATTAAGAGAAGTGTCGGTCGTTTAAAAAGAGGTGTTGCACAACTATGCACAGGTTTTTACATTTACCGTTTTTCATACTAGCTGCAAAAAATTGACGTGACCACTAGCATcgtcaagttaaaaaaataaaaaaaaagactatgcAGGTTTCTGGAATACTTTGCCCTATTGCCATTGGTCAGATGTTCTTGCCTCAACCTCACGCCACTGGTTGAACTAATGTTAGGCAGGTTTTGGCAGCAATGTTTTGGTCGCTCCGAAGTCACGTGATTAACACAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34188 lncRNA upstream 173318 24721526 ~ 24809963 (+) False G23026
TU34184 lncRNA upstream 173318 24754538 ~ 24809963 (+) True G23026
TU34167 lncRNA upstream 309569 24634157 ~ 24673712 (+) False G23014
TU34230 lncRNA downstream 86474 25079692 ~ 25087970 (+) True G23044
TU34290 lncRNA downstream 375059 25368277 ~ 25374497 (+) False arhgap17b
TU34295 lncRNA downstream 386010 25379228 ~ 25382913 (+) True G23077
TU34296 lncRNA downstream 399300 25392518 ~ 25394254 (+) True G23078
TU34258 lncRNA downstream 418700 25411918 ~ 25447270 (+) False G23061
XM_043234713.1 mRNA upstream 128044 24852381 ~ 24855237 (+) True LOC122341374
XM_043235818.1 mRNA upstream 149325 24831425 ~ 24833956 (+) True LOC122342024
XM_043235820.1 mRNA upstream 154842 24815873 ~ 24828439 (+) True LOC122342030
XM_043235813.1 mRNA upstream 201671 24771291 ~ 24781610 (+) True il12rb2l
XM_043235817.1 mRNA upstream 214010 24767629 ~ 24769271 (+) True LOC122342023
XM_043235808.1 mRNA downstream 1037 24994255 ~ 25009566 (+) True LOC122342014
XM_043235809.1 mRNA downstream 1037 24994255 ~ 25009566 (+) False LOC122342014
XM_043235810.1 mRNA downstream 112963 25106181 ~ 25162861 (+) True grin2ca
XM_043235819.1 mRNA downstream 284574 25277792 ~ 25286925 (+) True gaa
XM_043235176.1 mRNA downstream 294536 25287754 ~ 25308434 (+) False tbc1d16
TU34186 other upstream 171704 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 173318 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 452718 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 533992 24446878 ~ 24449289 (+) True G22953
TU34141 other upstream 543818 24434055 ~ 24439463 (+) True G22996
TU34266 other downstream 418700 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 452081 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 582758 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 620018 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 620056 25613274 ~ 25615293 (+) False LOC122336634

Expression Profile