RNA id: TU34264


Basic Information

Item Value
RNA id TU34264
length 1737
lncRNA type read_through
GC content 0.49
exon number 4
gene id G23061
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25411918 ~ 25447270 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTACagtctattttgtttttttttTTGGTTCTTTCTGGACTTTTATTTCAATCCATTGTACAAAACTTAGGAGGCTGTCTGAAGAGCTCCCTGAGTCCTCTGGACATTGACCCTGGTGTGAGTCTTGGCCAGATGATCAGTGAATTCCTGGAAGGAGACTTGGTGAACACCGTTTCCTTCCAGAGATCAGGGGTCAGGTAGCTGTACGTCTTTGAGATCGCGTCGAAGGTGGCCTTGGCTGCAATGAGAGAATAGACATtaccatcaaaataaatcaagaacGTTCCGCTTCATCCTGAAACGCCGGTATTCAGACCAAAGCCCTTACCGAAGTTGCCCAGAGTGGCGGTGCAGCCCCTGGCTGAGGTGTAGCAGTCGTCGATACCAGCCATCATCAGCAGCTTCTTGGGCACAGGAGCGGACACAATACCAGTCCCACGGGGAGCGGGGATGAGCCGCACCAGGACTGAGCCGCAGCGACCGGTCACCTGAGCAGACACGCGCTCCGTCACTAAACGCATCCAAACAGAGCCGAACCGAGCACAAAACCACCTCTGAACTCACCTTGCACGGCACCGTGTGGGGCTTTCCGATCTTGTTACCCCAGTATCCTCTCCTGACGGGAATGATGGACAGTTTGGCCAGGATAATGGCACCACGGATAGCGGTCGCTACCTCTTTGGAGCACTTCACTCCCAGACCGACATGGCCGTTGTAGTCACCGATAGCAACAAAGGCCTAGAAGATTGAGAGACAACACTAGTTTAACAAAAAGAAACCGGGAATTTCAATAGTTAAACGCTTAGAAAGTCAGTCACCTTAAACCTGGTGCGCTGACCAGCCCTGGTCTGCTTCTGGACAGGCATGATCTTCAGGACTTCATCTTTCAGGGCTGAACCCAGGAAGAAGTCAATGATCTCAGACTCCTTTGATGGGCAGAGAATACAGGTAGATCTCCTCCAGAGTCTTGATCTTCATGTCCTTCACCAGACGACCAAGTTTGGTCACGGGCACCCACTATATGAAACAGAAACGGTACATAAACAGGCTAAAACTACGCATTTTTTAGATTGACACTGACAGCTACCGGCATATCACAGCGATTAGTGAACAAAGATAAGCCATAATAAAGAGGCCGACTGTCCTCAATGTGAGCATCTCTTTAACAAGGCGTCTTAACGCAGGTTTACAGCAGCGGGTGAAGGTTGGCGCTTTACCTCCTTATCCTCAGATTTTCCTCCGCGGGCCCCGCGGCCTCTTCCACGGCCCCTGCCGCGACCACGACCGCGACCCCGGCCGCCAGTGCCGAAACCCCCGCGAAAACCTCCTCTACCACCGGCGTCGTCCGCCATTTGCTGTGAAACACGACACAACCGTCAATTAGCAAACCAGTGACTCCAACGACAGATGATAAAGACGGACTTAAAACTCCCGCTTACGAGCGACTAACTATACAAGACACATAATGGACAAATCATGTATATCTGGATAactattgtataaatattacgAATTGTATAATACAGTTAAGTATGTGGAATACGTTACCGGTACCCGCTATTTTTGAGACCACATCCATAAAAGTGCCCTAAAATAACCTATCCGCCCAAATCATAAGATTAATTTTGCGCCCACATTGTTACTAAGACGCACGCAGATGTGTCCTACagaattgtaacatttttatttcgcGATTGCGGAGATATTAAGAGATATTGTTCGCTATGACAGCGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34296 lncRNA upstream 17664 25392518 ~ 25394254 (+) True G23078
TU34295 lncRNA upstream 29005 25379228 ~ 25382913 (+) True G23077
TU34290 lncRNA upstream 37421 25368277 ~ 25374497 (+) False arhgap17b
TU34210 lncRNA upstream 144761 24957311 ~ 25267157 (+) True G23031
TU34333 lncRNA downstream 66944 25514214 ~ 25519748 (+) True G23106
TU34339 lncRNA downstream 77056 25524326 ~ 25569403 (+) False tob1a
TU34385 lncRNA downstream 165954 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 183869 25631139 ~ 25767050 (+) True G23125
TU34419 lncRNA downstream 187354 25634624 ~ 25727704 (+) True G23127
XM_043235730.1 mRNA upstream 37420 25346784 ~ 25374498 (+) False arhgap17b
XM_043235729.1 mRNA upstream 37420 25346785 ~ 25374498 (+) True arhgap17b
XM_043235731.1 mRNA upstream 37420 25346786 ~ 25374498 (+) False arhgap17b
XM_043235732.1 mRNA upstream 48226 25346786 ~ 25363692 (+) False arhgap17b
XM_043235162.1 mRNA upstream 72027 25336185 ~ 25339891 (+) True cbx8a
XM_043233823.1 mRNA downstream 3125 25450395 ~ 25454405 (+) True kdelr2a
XM_043234972.1 mRNA downstream 7890 25455160 ~ 25484444 (+) False spag9a
XM_043234978.1 mRNA downstream 7890 25455160 ~ 25484444 (+) False spag9a
XM_043234969.1 mRNA downstream 7891 25455161 ~ 25484444 (+) True spag9a
XM_043234971.1 mRNA downstream 7891 25455161 ~ 25484444 (+) False spag9a
TU34203 other upstream 426001 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 600341 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 601955 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 881355 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 962629 24446878 ~ 24449289 (+) True G22953
TU34364 other downstream 128706 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 165966 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 166004 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 213778 25661048 ~ 25662317 (+) True G23121
TU34366 other downstream 213778 25661048 ~ 25662317 (+) False G23121

Expression Profile