RNA id: TU34278



Basic Information


Item Value
RNA id TU34278
length 916
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G23069
representative False

Chromosome Information


Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25430474 ~ 25434548 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTTGGAAGACATTTATTGCAACaagaaaattcatatttaacaatataatttcatacaaaagcggttaataaaacaacacactATTAATCGAGATCGTAGCTGGatttgtgaaaacaaacaaacggcTGTGTAAACTTACATTAAGACTTTATTCAGTTTGAACactataattattaatgttatttttgatcACAAAAAGTGCAAGTTCAGCTGAAACGATAACTGGATGAGCTACAACTAGGCGAAAAGCTGAGACCGGTGTGCAGCGTTCGATCATATATCCAACATTCAAAATCATTcagaaacatcaaaataaaccaTTTCACCGAATCCCGTTTTCTGATGGACATAAAAATACACCAAATATAATTTAGCTGGAACACCTCGCTTCGTTTATaacatcttaaaaataattatttttgattttacaaaataaaacattgcacattaagaaaacatttaaccACGTATCATCGGTTCGTGGCCTGTTTCGTTCCCGAAAAGCTGAATgcgtccaaaaaaaaaacctacgtGACCTTACGTAAATACGACCTTGCCTTCTCAAAACAGACCCGGTATGATATTATGAAGTTtctgtaaaagtaaataattcgTTTTTGTTTGATCTATTGCTTGCAGcggtgttttaaatgcattgttttacgGGGTTAACAGTCCTGTGTATTGCTCACCGAAGACGATACGCTGCCtcgaaggaaaaaaaaaaaaaggtgaaaataaGCAGCTCGATAATTGTGCTTGTGCTGTAGATGGAACATGAGCGTGGTGTTGATGGAGACCAGCCTGAAAGCTCAGTTCTTTGGGACTCTAAAGCCGTCCTTCTCCTTACGGACGCTTTTCATGGCTTCGATCGGGTCACTGGTCCCGGCGTGCTCTTGTACGGACTTCTCTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU34317 lncRNA upstream 9344 25420272 ~ 25421130 (+) True G23096
TU34316 lncRNA upstream 10699 25418670 ~ 25419775 (+) True G23095
TU34296 lncRNA upstream 36220 25392518 ~ 25394254 (+) True G23078
TU34295 lncRNA upstream 47561 25379228 ~ 25382913 (+) True G23077
TU34290 lncRNA upstream 55977 25368277 ~ 25374497 (+) False arhgap17b
TU34262 lncRNA downstream 13879 25445299 ~ 25447270 (+) False G23061
TU34333 lncRNA downstream 82794 25514214 ~ 25519748 (+) True G23106
TU34339 lncRNA downstream 92906 25524326 ~ 25569403 (+) False tob1a
TU34385 lncRNA downstream 181804 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 199719 25631139 ~ 25767050 (+) True G23125
XM_043236009.1 mRNA upstream 409 25423943 ~ 25430065 (+) True narfl
XM_043236008.1 mRNA upstream 409 25424003 ~ 25430065 (+) False narfl
XM_043235730.1 mRNA upstream 55976 25346784 ~ 25374498 (+) False arhgap17b
XM_043235729.1 mRNA upstream 55976 25346785 ~ 25374498 (+) True arhgap17b
XM_043235731.1 mRNA upstream 55976 25346786 ~ 25374498 (+) False arhgap17b
XM_043234952.1 mRNA downstream 4743 25436163 ~ 25437150 (+) True fahd1
XM_043233824.1 mRNA downstream 11190 25442610 ~ 25444546 (+) True ndufb10
XM_043233823.1 mRNA downstream 18975 25450395 ~ 25454405 (+) True kdelr2a
XM_043234972.1 mRNA downstream 23740 25455160 ~ 25484444 (+) False spag9a
XM_043234978.1 mRNA downstream 23740 25455160 ~ 25484444 (+) False spag9a
TU34203 other upstream 444557 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 618897 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 620511 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 899911 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 981185 24446878 ~ 24449289 (+) True G22953
TU34263 other downstream 13879 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 144556 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 181816 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 181854 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 229628 25661048 ~ 25662317 (+) True G23121

Expression Profile