RNA id: TU34290


Basic Information

Item Value
RNA id TU34290
length 1570
lncRNA type sense_over
GC content 0.40
exon number 3
gene id arhgap17b
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25346784 ~ 25374498 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCCCACCGCAGCCGCGACCGGCGACGGCCCCAACGGAGTCTGCGTGTCTGGATCCAAGATCATCTCAGATGTGTGATCTTCTGCCTGTGAGATGTGGTTTGAGTGGCAGATGGTGAGATGACGAAGATGGAGATGGAGATGGAGATGGAAAGGAAAGATCTTTGACGGGACCAGGGCTGGATCTTGTCCCCGAGATTAAGGAGGATGAAACCACAGAAACACTCTCAGAAGATGAGCACCAATCAGAAAACACCTCCCTGTGAGGTGGGCGGAGTCCAGTCCTCACACAGCCAATAGAAAGCTATGTTCGTAATAGAATGCTAGCATACTTACCGGGTTTTGTATTCTTACTAGTGCTTTTGAGAACGTGAAAGTATACGGGATGAAAAACGTTTCACATGACTTCAgcttatgaaaaaatatagGTATTCAGATttaggtataaaaaaaaaagtatttggtgAGAATGATCAAGTCGATGCATTGCATTATGGGACGTAGCACCCAGCACAGTGTGCAATTATAGTAGGTCATCAGAGCTTACAGTATATTTGTATGCCATCTTGAAAAGTGTACACGGTGCATACAGCACATAAAGTATGCTAGCATGCTATTGCGAACATAGCCATTCGCTTTAACCTTTGACCCCCACAGAAAACTCCTCACAATGCTGGCACATTGTAAACTCTACGCACATGTTAACATGCATATACAGATGAAATGAGCTGGTTTGGGTTTTAGTCTTTATATATGTGCCTTGAAAAACGTACCGAATCACTGAGTTTGTGCGACCCACTCTGTTTTCACGGTGAATGTTTCTTCGTTTTAATCGTTCCTTTTCTCTTATTTCACAAAAATTGgattttaaaaagcttgaaaaaaaaaaacaaatcacggTTATACTGATGTTGTCGATTTAATTCGCGCATAAGATTTTCATAAGTGTTTGTTCCTGGGGTGCAATACTGACTGCAGTGTAGCGTTGACACATTACAGTCGTTTTTCTGATAGTTTAGTAGTTTTTAACTATTATAATAGTTTTACAGGGTTTACTTTAGTGGAGTGTGTGCTGCCAAGTACCAATGAATCCATCCGCTGTTGACCATTCAAATAAACCCTGCTTGTGCTGTTATGAAATACTTCATTCTCAAGATGAccaaagatgctttttttttttaaaaaaaaaagcgcgtGATCCTGTGTCAGAGTTTTAGGGGGGTTTGTTTCATGCTGTAtgcaactgcaaaaaaaaaaaaaacaaatgtgaatgAAAGGGTTAACGGATCAGTCAAGCTCAGGAAGCGTCAGCTAGAAAGCCAAAGCCATTGTTTCCTTGCAGGAGCGTGTGTTTATATCTCTGTGCATATGTTATCTTAAACTGGCTCTTAAATCGCgtgttgatttttcttttctgtttcgcCCTCTTTTGTACGTTCGTGAGCACAGTTCCTCCATCTGTATTCTCGTTCTTCACGTTCTCCAGTGCCTCAGATGAACAAATGTTgtacaaattcatttttttcaactgttttctgattatatatctaataaaaagcttaattacaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34210 lncRNA upstream 101120 24957311 ~ 25267157 (+) True G23031
TU34190 lncRNA upstream 277843 24730359 ~ 25090434 (+) True G23027
TU34230 lncRNA upstream 280307 25079692 ~ 25087970 (+) True G23044
TU34188 lncRNA upstream 558314 24721526 ~ 24809963 (+) False G23026
TU34184 lncRNA upstream 558314 24754538 ~ 24809963 (+) True G23026
TU34295 lncRNA downstream 4731 25379228 ~ 25382913 (+) True G23077
TU34296 lncRNA downstream 18021 25392518 ~ 25394254 (+) True G23078
TU34258 lncRNA downstream 37421 25411918 ~ 25447270 (+) False G23061
TU34264 lncRNA downstream 37421 25411918 ~ 25447270 (+) True G23061
TU34316 lncRNA downstream 44173 25418670 ~ 25419775 (+) True G23095
XM_043235732.1 mRNA upstream 4585 25346786 ~ 25363692 (+) False arhgap17b
XM_043235162.1 mRNA upstream 28386 25336185 ~ 25339891 (+) True cbx8a
XM_043235159.1 mRNA upstream 34412 25327720 ~ 25333865 (+) False cbx4
XM_043235158.1 mRNA upstream 34412 25327767 ~ 25333865 (+) True cbx4
XM_043235160.1 mRNA upstream 34412 25327767 ~ 25333865 (+) False cbx4
XM_043236009.1 mRNA downstream 49446 25423943 ~ 25430065 (+) True narfl
XM_043236008.1 mRNA downstream 49506 25424003 ~ 25430065 (+) False narfl
XM_043234952.1 mRNA downstream 61666 25436163 ~ 25437150 (+) True fahd1
XM_043233824.1 mRNA downstream 68113 25442610 ~ 25444546 (+) True ndufb10
XM_043233823.1 mRNA downstream 75898 25450395 ~ 25454405 (+) True kdelr2a
TU34203 other upstream 382360 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 556700 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 558314 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 837714 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 918988 24446878 ~ 24449289 (+) True G22953
TU34266 other downstream 37421 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 70802 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 201479 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 238739 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 238777 25613274 ~ 25615293 (+) False LOC122336634

Expression Profile