RNA id: TU34295


Basic Information

Item Value
RNA id TU34295
length 3568
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G23077
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25379228 ~ 25382913 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ACCTGGTCAGAACACCAGTACCACATGGAGGGTATGGACATGCCCAGGATCACTCCCGGCCAGggcaggtcagaggtcacagggTGGCGGAATATGTGAAAGGCATCCTCCCGTGGGATCCCGCAGGTGGTGTTGGGCACTCGGATGGAGGGAATGGCCTGAGGATACTTATCCAGGACAGCTTGAAATCCCCCGACCTCTGCAAAACCTTCACAGCAACGTTGAGAGGAGCACATTATCATTGTATTAAAGGCTTCGGGACTTAAATCAGCATGATTGTCATGGTCACTCACTGAAGCCCATGAGGATCAGGGCTCCGATCACCATGATGAGAGTCTGAACCGCATCGGTGTAGATCACTGCTGCCAGACCACCTGGGACCACATCAGTCATGAAATGCTTTCGCAGGTTATAATACAGATTTTAGATCTTTATGAGAATAGAGAAGGCCACACTGCTATtgtatttattgcttttgttgAGAACAGACCTCAACTATAACTAGGGCTGCCCTAGACTAAGAATTGTTTTGGTCTACTAGTAGTCAATCATTTTAAGCATTAATCATCTAATCACACAGaccatttaaatcattataacaAGCCTTTAATTGCCTACAAAGCGCTCAAACACAGCAGTATCTTCACAGAAATGAAGCGTCCGTATGCATTCCATTTGACGATTTCCACACAAATAAACGTTTGctttcacacaaataaatgtaaagtcttTACAGATTAAGGGGGTATTTTAAGAGCAAGTGGCAACACTTTAGCTTCCAGACTTCACACAGACGAACATTTAACACACAGTTAACATTAAAGCGAGCGGTCACTGAAAAGTTGCTGATATTGGACCATATTTGAGGTTGATGAACGACGGGTACGCATTTGGATGTCCTGCCCAATGTGTCgccttttatttaatattaaataatgaaatgttagGCGTTTATTggttgatatttaatattaaaacttaCGACATTTTGACAAGTGAGTTTTAGTTCGAATGAGTTTTAGTTTGGGCGCTAATGCAGTTATCATGGTGTGAACAGCCCCAAAGAGTGGTCAGATACGCAACCTGCGACGGTGTAGACAGCGGTGATGCCGAGAAGTAAAAACACGGCGAGGTAGATGTCCCACTGCAGAGCCTGCTGGATAAACACAGCTCCTGCGTACATGTCCACCTGAACTCAGAGCAACACAGATCACCTCCAGCTCCGCTCCGAAGCACCTTCGCAAGCTTTACATCGAGCACACTTACCGATATTTTGGTGAAGATGTAGATGAACAGATACAAAACGCACAGAAACAGCTGTATTCTTTTCCCGCCAAATCTTTTCTGTAAATACTCGGGCATTGTGGTGACCTGCGAAATAATGGAAAAGCCTTTTTTAATTCGCACGAATCGCAGGAAGGCCACAGCTGCGTACACAAACACGCGTTCAAAAGGTTTTATGGttatattctaataaataaatacctttatTTAACAAGGACGCGTTAGACTGATGTGGTAACGctttataataactttaattaatgaatacttACACTATAATGCTTAACAGATCgttcatatttattcaaatagcTAGAAATGTTGGAAATGGCGTCAACAAGCTGTAAGTCAATGCAGTACGCATGAAAGAACAATACATTcgttacagtatttattcgtCTTTTATAGTTAATATAGTTATAGTTAATATAGCTTTGATGAATAAACAAGCCAAGTATTTTCCTGAATAAAGGAATATTATGTTTGATGATATAGTAGTGGGCTACACTAAGTGTTGAGGCAATAAAACATGTCTTTCACCCAAATTATGTGTTAAGCCTTTAGCAACCATTTAATTTTCCCCCTTTTACACAAACATTGTTACATGAAGAGactaaatgattaataaacagtCTCAACTGTAGACtgggtactgcaaaaacatgaacaaataacGCTTTTTACCATTGAGATGGACTGCTCGTAAAGGAAATacagattaatgtttattaccATATACAAATTATGAATAGCTTCCACTTTAGAttgcaaaaaaagcatgaacACAAAATGAATCAATGATTAAAGATCTACACAACAAACGAAGACCAGATATGTAACCTTTACAGGCTGTGGTTATgagttaataattaatatgttaaCATGAGTAGTCTGTGAAGTGCTCAAAATGActaattaagctttttttttggctaacaTTTGAATTGAagtttaatgatgttttatagCATTCAAAAGTACATTAACAATTAGCTTTTAATCATTGTATAATTTCTGTTGAATTCACCAGTAGATgtagatatataaatacacacacacacacacacatatatatatatagtgcatgaGCATATAAATTGAAAGTTTAATGGCATTTGTAAGAATTTcagtttgcattaaatatgatCTGTTAAACATTAGGTAGTGTTTAATGAGTACTTTAGCAAACACTGACAAGCAGGTTATTTCTAGATATGCATGTAACTAGCATGTAATTTCTAGATATGTGAGTATATAATAATCTGTGaagcattataataataacaaatattaagtGTTACAGAATTTAGTTTTATCatggttaaaaaacaaaaaacaaacctgtTTTCATCATCGGTAATAATGAGtagtgctatcaaacaattAGTCacaattaactgcatccaaaataaaagttttgtttaaataatatgtgtgtgtgtatactgtgtatattcatgtgtgtgtatttatatatacatttatatatttattgaagaaaaatgtgctgtttatataaaaaaaatataaatgtatatgcatgcatttccaaaatgtgtatatatacataataaacatacacagtacacacacatgtattatgtaaaaaaaaacgtgattaATCGTACTAATGGTAAGAAtagtttcttgagcagcaaagcGGCATATCAGACgaaaattcagctgtgcatcacagaaataagacacaattttactgtattttttatcaaataaatgcagcctttgttaGCATAACATTCAAAAATGGTTGAACGGTAGGCCTAGTATACGCACAACTTTTAAAGTCTAATATATTATTTGCAATTTGTTAAATGGACTCAATTTAGTTAAGTGTGTGCGTTTACTGAATTTTGTTCCCGTCTCACCCTTGATGCAACATAGATTGGTAAAAACAGCCAGCCCAAGAGCAGCACCATCAGCATGCCCATTCATAGGCCGTGGAAGCGATGCCCGCTGCTGCCCCAGAGCCGGCCAGACCAATGAAGTGACCACTGCCCACGTTACTGGCAAACAGAGAGGCGCCCACCTGAACCAACAACACAGATGGAAAACTGAGCCGAGCTTCAGATTCTACTTAAATACGCTACACTTCAAAACGTTGAATCATGAATCATGAACATGAATCTGCGCGGATCAGATTTCACCACTAAATTAAAAGggaagaaacagactaataggcctattttttaggttttaagaCATTAATCATAACTATCTATAACCATTTCAGCTGAGATGAAATCAActtaaaagtcaaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34290 lncRNA upstream 4731 25368277 ~ 25374497 (+) False arhgap17b
TU34210 lncRNA upstream 112071 24957311 ~ 25267157 (+) True G23031
TU34190 lncRNA upstream 288794 24730359 ~ 25090434 (+) True G23027
TU34230 lncRNA upstream 291258 25079692 ~ 25087970 (+) True G23044
TU34188 lncRNA upstream 569265 24721526 ~ 24809963 (+) False G23026
TU34296 lncRNA downstream 9605 25392518 ~ 25394254 (+) True G23078
TU34258 lncRNA downstream 29005 25411918 ~ 25447270 (+) False G23061
TU34264 lncRNA downstream 29005 25411918 ~ 25447270 (+) True G23061
TU34316 lncRNA downstream 35757 25418670 ~ 25419775 (+) True G23095
TU34317 lncRNA downstream 37359 25420272 ~ 25421130 (+) True G23096
XM_043235730.1 mRNA upstream 4730 25346784 ~ 25374498 (+) False arhgap17b
XM_043235729.1 mRNA upstream 4730 25346785 ~ 25374498 (+) True arhgap17b
XM_043235731.1 mRNA upstream 4730 25346786 ~ 25374498 (+) False arhgap17b
XM_043235732.1 mRNA upstream 15536 25346786 ~ 25363692 (+) False arhgap17b
XM_043235162.1 mRNA upstream 39337 25336185 ~ 25339891 (+) True cbx8a
XM_043236009.1 mRNA downstream 41030 25423943 ~ 25430065 (+) True narfl
XM_043236008.1 mRNA downstream 41090 25424003 ~ 25430065 (+) False narfl
XM_043234952.1 mRNA downstream 53250 25436163 ~ 25437150 (+) True fahd1
XM_043233824.1 mRNA downstream 59697 25442610 ~ 25444546 (+) True ndufb10
XM_043233823.1 mRNA downstream 67482 25450395 ~ 25454405 (+) True kdelr2a
TU34203 other upstream 393311 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 567651 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 569265 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 848665 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 929939 24446878 ~ 24449289 (+) True G22953
TU34266 other downstream 29005 25411918 ~ 25447270 (+) False G23061
TU34263 other downstream 62386 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 193063 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 230323 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 230361 25613274 ~ 25615293 (+) False LOC122336634

Expression Profile