RNA id: TU34316


Basic Information

Item Value
RNA id TU34316
length 1008
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G23095
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25418670 ~ 25419775 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CATCTTTGAAAAATGCAAGATTTCGAGGGTTTGCAAAGTTGCGCTTGCGATGATATGGGCTGAACGACCCCTTGACATGGCTGCAAAACACGAGACAAACATCTTAGTTGCACTGAAAAACACTGGCTCGTGCTCTGTGTGAAAGTTTATGTGAGGCCACTCGTAGTCAGAATCACTCACTAGCTCTGCATGATCTTTTTAACTGAGCTCTCGAGGTTGTCGTTGATCTTCTTTACCATGTCATAAACATCCGAGCCAGGAAAGGATGCACCCTTGCTGCAGAACAATCGAGAGAGCATCATAACGTATTCTCATATATCCACATGAACATCTATATAAACCGGTTCATACCACTCATTTTTGCTCAGTTCAATCTGACACCCGAGGAGATGTTCCACCTCCTTCTGGGCCTCAGCATCAAACGAACCTAATGCACACATATACGTCACATGCAATATTATTCTCATGCATACTCATCCCCTCAAGAAATAAAAGATGGTTGGTTCAGACACTCACCGTATTTCAGCGTCTGAAGACAGACCGCCAGAGAAGGGATGGCCACTGGGAGAAGCTCGCACAGCACAGTGTGATGCTCGTTCCTAAAAACCTTTATAGCTTGTCCCAAGCATGATGACGGTACATTTGAAGGAGCATCTCTGTAAACCTGCGGGCTTACCTCTGCCAGCCAGTCAGAGCGATGCCTTGGAGTCTCACAGACTTGTACTGCGGCATAGACGCAATGACTTTCTGCCACTGTAGGTGGTTTTTTAAATGGTGATTGATTGGAGTCCATTTCTGGTCTATTCCAGAGGCTCCTTTGAAAGCGCTAGCAAACCACACACCCTTAAATCCGGCCTGTTCATACTTGGAGATATAATTAcctacaaaatatgaaaattagatTTGGTTTGACATACACatccattcaaaagtttagttcatctttgatcaaaaatagagttaaaaaaatatcatacgttacattaaaatagcagctttatatttata

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34296 lncRNA upstream 24416 25392518 ~ 25394254 (+) True G23078
TU34295 lncRNA upstream 35757 25379228 ~ 25382913 (+) True G23077
TU34290 lncRNA upstream 44173 25368277 ~ 25374497 (+) False arhgap17b
TU34210 lncRNA upstream 151513 24957311 ~ 25267157 (+) True G23031
TU34317 lncRNA downstream 497 25420272 ~ 25421130 (+) True G23096
TU34278 lncRNA downstream 10699 25430474 ~ 25431420 (+) False G23069
TU34285 lncRNA downstream 10699 25430474 ~ 25434548 (+) True G23069
TU34262 lncRNA downstream 25524 25445299 ~ 25447270 (+) False G23061
TU34333 lncRNA downstream 94439 25514214 ~ 25519748 (+) True G23106
XM_043235730.1 mRNA upstream 44172 25346784 ~ 25374498 (+) False arhgap17b
XM_043235729.1 mRNA upstream 44172 25346785 ~ 25374498 (+) True arhgap17b
XM_043235731.1 mRNA upstream 44172 25346786 ~ 25374498 (+) False arhgap17b
XM_043235732.1 mRNA upstream 54978 25346786 ~ 25363692 (+) False arhgap17b
XM_043235162.1 mRNA upstream 78779 25336185 ~ 25339891 (+) True cbx8a
XM_043236009.1 mRNA downstream 4168 25423943 ~ 25430065 (+) True narfl
XM_043236008.1 mRNA downstream 4228 25424003 ~ 25430065 (+) False narfl
XM_043234952.1 mRNA downstream 16388 25436163 ~ 25437150 (+) True fahd1
XM_043233824.1 mRNA downstream 22835 25442610 ~ 25444546 (+) True ndufb10
XM_043233823.1 mRNA downstream 30620 25450395 ~ 25454405 (+) True kdelr2a
TU34203 other upstream 432753 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 607093 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 608707 24721526 ~ 24809963 (+) False G23026
TU34113 other upstream 888107 24529541 ~ 24530563 (+) False mcm5
TU34053 other upstream 969381 24446878 ~ 24449289 (+) True G22953
TU34263 other downstream 25524 25445299 ~ 25447270 (+) False G23061
TU34364 other downstream 156201 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 193461 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 193499 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 241273 25661048 ~ 25662317 (+) True G23121

Expression Profile