RNA id: TU34339


Basic Information

Item Value
RNA id TU34339
length 539
lncRNA type sense_over
GC content 0.43
exon number 3
gene id tob1a
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25524309 ~ 25569403 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TAAAACACCCAGATAGAGGGGGTGGAGAGGAGCTTATTGGGAAGGTGAAACAGCAAATACCTTACAGATAACTGGGAGCAagataagaagaagaagaagaggaaaaacaaaaaaactcaacaaaaataaaacacttcaagTCTACCAACTGGAATACCTTTATGTTAATGTGAAGAAAGTATTTATATCTGAAGTTTTTTATGTGCACTAGTCAAGGCTACTGCAACTACTGAAAATCGTCATTTTGTAAACTCAAGAACCGGATCAGCCGTTTGTGGTCTGAGACGTTCCCTCTGCAACCAGCACTTTGTTTCGAACCAGGGGGGGGGGACAAAAATAAGACACTCAACTTGCCCCGCCGTGGCTTAAACTCTTGTCTGTTCCGGATGATTTTCGACAGCGAAGTTGAAAGGAGTCTATTTACAGTCTTCAGACCGAAATCGGATCAAAACGGCACGATATAGTAAATAGGGACGCGTTCAAATAATCTTTACCGACTACCGCAATCCACTCGGATCCGCTGCACCTCCCATGTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34333 lncRNA upstream 4578 25514214 ~ 25519748 (+) True G23106
TU34262 lncRNA upstream 77056 25445299 ~ 25447270 (+) False G23061
TU34285 lncRNA upstream 89778 25430474 ~ 25434548 (+) True G23069
TU34278 lncRNA upstream 92906 25430474 ~ 25431420 (+) False G23069
TU34317 lncRNA upstream 103196 25420272 ~ 25421130 (+) True G23096
TU34385 lncRNA downstream 43821 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 61736 25631139 ~ 25767050 (+) True G23125
TU34419 lncRNA downstream 65221 25634624 ~ 25727704 (+) True G23127
TU34418 lncRNA downstream 77783 25647186 ~ 25725255 (+) True G23126
TU34430 lncRNA downstream 125083 25694486 ~ 25694868 (+) True G23135
XM_043234975.1 mRNA upstream 39882 25455162 ~ 25484444 (+) False spag9a
XM_043229171.1 mRNA downstream 4354 25573757 ~ 25577014 (+) True LOC122331665
XM_043233723.1 mRNA downstream 17120 25586523 ~ 25604509 (+) True LOC122336725
XM_043233718.1 mRNA downstream 40077 25609480 ~ 25611691 (+) True LOC122336618
XM_043233719.1 mRNA downstream 43756 25613159 ~ 25615628 (+) False LOC122336634
XM_043233721.1 mRNA downstream 59496 25628899 ~ 25630633 (+) True LOC122336676
TU34266 other upstream 77056 25411918 ~ 25447270 (+) False G23061
TU34263 other upstream 77056 25445299 ~ 25447270 (+) False G23061
TU34203 other upstream 538409 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 712749 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 714363 24721526 ~ 24809963 (+) False G23026
TU34364 other downstream 6573 25575976 ~ 25577043 (+) False LOC122331665
XR_006249348.1 other downstream 43833 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 43871 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 91645 25661048 ~ 25662317 (+) True G23121
TU34366 other downstream 91645 25661048 ~ 25662317 (+) False G23121

Expression Profile