RNA id: XM_043229171.1


Basic Information

Item Value
RNA id XM_043229171.1
length 1708
RNA type mRNA
GC content 0.53
exon number 9
gene id LOC122331665
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25573757 ~ 25577043 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ctttattttattcagaacatCAGCGTTCCGTATCTTTGTGACGCGGTGTGTTGCAGTAAAACAGCACCGTGCAGAAAACATGGCTGAAGCGTAAGGTTAACTTCACGTAAAATATGTCGGGGCGAGCATTAACACGACGGCATGCTTTACATCGTTTGGGAACGGGGCTCTCTTCTGTACTGTTGAGATGTATCGGCACTGCTCACGGATCGCCTCCTCACGCGGACGAAGCGTCGCTTTATGTTCACTGGCCCTACTGCCTAAAAAGATGCTCCTACTGCAACTTCAACAAGTACATTGCTCGCAATCCAAACCACGCGGTCATGACGGCATGTCTGCGGAAAGAGACGCGAACCCTGCTGCGGCTCAGCCGGGTCTCCAGGATCAGCTCTGTGTTTTTTGGCGGAGGAACACCCAGCCTGGCTCAGCCCTCCGCAGTCGCCGCCGTCTTGGAGACCGTCTCCAGACACGCTCATCTCTCAGATGAAGCGGAGGTCACTCTGGAGGTCAACCCCACGCCCGCTGGAAAAGCCGGTCTGAAAGACTTCAAGTCCGCAGGAGTCAACCGGTTTTCCGTGGGAGTCCAGTCGCTGAACGATGACCGCCTGAGGACGCTAGGCAGGGATCACGATTCCCGGCACGCTCTCCGGACCGTGTCGGAGGCCAGGACGCTCTGTCCCGGACGCGTCTCGGTGGACGTCATGTTTGCTCTTCCGGGACAAAGTGTGAAGGCGTGGGAGGGCGAGCTGGACGAACTGCTGCCGCTTTGCGACGATCACGTTTCACTGTATCAGCTGACTCTGGAAAGGGGCACGCGGCTTTTCAAGCAGGTGCACGGAGGCGAGCTGAGCGTGCCCGGGGACGACGACGCCGCCGCTATGTACGACTCGGCGCGACGAGTCCTGGAGAAAGCTGGGTTTCGGCAATACGAAGTGTCCAACTTTGCCAGAAATGACGCTGTGGGTGAACATAACGTCGGGTACTGGAAGGGGCGGCAGTACATCGGTGTGGGACCAGGGCGCCACGGACGGTTTGTGCCGCGTGCGTGTGGGAGGAGTTCAGAGGAAGCTCGGACCCAGACTTTAGAACCGGATGTTTGGATGCGAGAGGTTCAGCGTCCACGGTCACGGGACACGCCGCGGATCCAGCTCGACCGCCGTGGCCTGCTGGAGGAGGTTTTGGTCATGGGTCTGCGTATGAACGAAGGGATCACCAAGCAGCACTGGGACCTGTTCAGCCCCGAAGACGACCTGCAACGCATTTTTGGGAGCTCTGAAAAAGTTCAAGAATTTCAAGCGGGGGGACTTGTAACACTTAATGACAAGGGTTTGCGGTGCTCCTGGGAAGGACTGGCTTTACTGGACAGCATCTTACCCACAATGCTGCTGGAATTAGAGGTGTTTTTCAGACAGCAGGACACCAGCAGAAAGACAGAcgtagagagagacagatgaccTTTTGCATCAGAGAAATATGAGAAAGAGATTGACATTGCAAGGCGATGcagaatacagtaaaattaaacaaattgtCCCATGAGGAGAAATATTAAATCTTGAAGAATGAACATTGGTGAGTGATGTGACGCTTGTTTTCTTgttattaattcttttattcacaaatacagtatttttttttctttatgatgAGAATGGTTTTTAATGTCtcaatttttaatgttttttttttatttttggggatgcatgta

Function

GO:

id name namespace
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051539 4 iron, 4 sulfur cluster binding molecular_function
GO:0004109 coproporphyrinogen oxidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34339 lncRNA upstream 4354 25524326 ~ 25569403 (+) False tob1a
TU34333 lncRNA upstream 54009 25514214 ~ 25519748 (+) True G23106
TU34262 lncRNA upstream 126487 25445299 ~ 25447270 (+) False G23061
TU34285 lncRNA upstream 139209 25430474 ~ 25434548 (+) True G23069
TU34278 lncRNA upstream 142337 25430474 ~ 25431420 (+) False G23069
TU34385 lncRNA downstream 36210 25613224 ~ 25615905 (+) True LOC122336634
TU34412 lncRNA downstream 54125 25631139 ~ 25767050 (+) True G23125
TU34419 lncRNA downstream 57610 25634624 ~ 25727704 (+) True G23127
TU34418 lncRNA downstream 70172 25647186 ~ 25725255 (+) True G23126
TU34430 lncRNA downstream 117472 25694486 ~ 25694868 (+) True G23135
XM_043234957.1 mRNA upstream 45719 25524309 ~ 25528038 (+) True tob1a
XM_043234975.1 mRNA upstream 89313 25455162 ~ 25484444 (+) False spag9a
XM_043233723.1 mRNA downstream 9509 25586523 ~ 25604509 (+) True LOC122336725
XM_043233718.1 mRNA downstream 32466 25609480 ~ 25611691 (+) True LOC122336618
XM_043233719.1 mRNA downstream 36145 25613159 ~ 25615628 (+) False LOC122336634
XM_043233721.1 mRNA downstream 51885 25628899 ~ 25630633 (+) True LOC122336676
XM_043233716.1 mRNA downstream 119857 25696871 ~ 25699105 (+) True LOC122336602
TU34266 other upstream 126487 25411918 ~ 25447270 (+) False G23061
TU34263 other upstream 126487 25445299 ~ 25447270 (+) False G23061
TU34203 other upstream 587840 24983349 ~ 24985917 (+) False LOC122342019
TU34186 other upstream 762180 24721526 ~ 24811577 (+) False G23026
TU34183 other upstream 763794 24721526 ~ 24809963 (+) False G23026
XR_006249348.1 other downstream 36222 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other downstream 36260 25613274 ~ 25615293 (+) False LOC122336634
TU34365 other downstream 84034 25661048 ~ 25662317 (+) True G23121
TU34366 other downstream 84034 25661048 ~ 25662317 (+) False G23121
unassigned_transcript_295 other downstream 127641 25704655 ~ 25706218 (+) True LOC122341888

Expression Profile