RNA id: TU34418


Basic Information

Item Value
RNA id TU34418
length 979
lncRNA type read_through
GC content 0.29
exon number 3
gene id G23126
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 25647186 ~ 25725255 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tttttttttttttttttttttttttttttttttttttttttttttGTGATAAACAATTAgagttctttttattattattattatagacaATGTAGTCATTTCCTGGGCAAATTCAACATAAACATCATATCTTGATAAACATGttgataaatgaatattatCAATGAAGACTTTTAAGTTGAGAgcaattaaatcaacatttacaatattatatatatatatatatatatatatatatatatatatataaaaggtctAGTTTGGAACACAGACATTCAACTGAACGGTTCTTCAGAATACACGTAATGCACACCATTGACATCAAGTTTCAATACAATTTCTGCAACATGTAGTTCTAGAATAGCTTGGGCAATGCAGTACACAGTAAAACCCGTTACATGCTAAACAGCAAATGTAAACCAGTCATACCCCATGTTAGGTGAAAAGAGAGCGATTGTTAGTAACTTccaaataataaagtaaataataaccTGAATGCATAACCTTTCATGGTACAGCATTTTTCCTTAtgaattttagttttctttcacATTATCAGACATGCTAATGCATTTTACGATGTTTTCAGCTGAGCGCTTGTGATCCAAAtcatgtatttctgtatttatttatttatttatttttacactaatTCCATGTTTGATTTTACTGGGAAATGTATTTAACTCTAACCACTAATGATTTCCTTCCCGTATTGATcgatagtaaaaataaatacaaatctagTAGGAATTTGAATGAAAGCACAGATGTTTTCATTACCCAAAGTGTGCTTTGATTTCCtgcgctatataaatatatcaaatttcCCCATATAAAGTTTGAAAATTGCGAGGTTTCATCGACCTTCCAGTATTCGAACAGTGTGATATTTAGCTGCCTATGACAATGTGCATTCAGCAGAAAAACGGTGGCATCCATCAGTCAAATGTTTACGtatcttttaaaacatattacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34385 lncRNA upstream 31281 25613224 ~ 25615905 (+) True LOC122336634
TU34339 lncRNA upstream 77783 25524326 ~ 25569403 (+) False tob1a
TU34333 lncRNA upstream 127438 25514214 ~ 25519748 (+) True G23106
TU34262 lncRNA upstream 199916 25445299 ~ 25447270 (+) False G23061
TU34285 lncRNA upstream 212638 25430474 ~ 25434548 (+) True G23069
TU34435 lncRNA downstream 44126 25769381 ~ 25775147 (+) True G23139
TU34439 lncRNA downstream 54161 25779416 ~ 25787023 (+) True G23142
TU34465 lncRNA downstream 103709 25828964 ~ 25830444 (+) True G23149
TU34467 lncRNA downstream 107293 25832548 ~ 25834113 (+) True LOC122341783
TU34469 lncRNA downstream 109128 25834383 ~ 25835141 (+) True G23151
XM_043233721.1 mRNA upstream 16553 25628899 ~ 25630633 (+) True LOC122336676
XM_043233719.1 mRNA upstream 31558 25613159 ~ 25615628 (+) False LOC122336634
XM_043233718.1 mRNA upstream 35495 25609480 ~ 25611691 (+) True LOC122336618
XM_043233723.1 mRNA upstream 42677 25586523 ~ 25604509 (+) True LOC122336725
XM_043229171.1 mRNA upstream 70172 25573757 ~ 25577014 (+) True LOC122331665
XM_043235398.1 mRNA downstream 107250 25832505 ~ 25834198 (+) False LOC122341783
XM_043230335.1 mRNA downstream 111931 25837186 ~ 25838307 (+) True LOC122332877
XM_043230326.1 mRNA downstream 111932 25837187 ~ 25840601 (+) False LOC122332877
XM_043235415.1 mRNA downstream 119432 25844687 ~ 25845748 (+) True LOC122341789
XM_043235956.1 mRNA downstream 124303 25849558 ~ 25850619 (+) True LOC122342152
XR_006249348.1 other upstream 31893 25613236 ~ 25615293 (+) False LOC122336634
XR_006249347.1 other upstream 31893 25613274 ~ 25615293 (+) False LOC122336634
TU34364 other upstream 70143 25575976 ~ 25577043 (+) False LOC122331665
TU34266 other upstream 199916 25411918 ~ 25447270 (+) False G23061
TU34447 other downstream 111888 25837143 ~ 25840600 (+) False G23146
TU34449 other downstream 111888 25837143 ~ 25850576 (+) False G23146
TU34450 other downstream 111888 25837143 ~ 25850576 (+) False G23146
TU34451 other downstream 111888 25837143 ~ 25840600 (+) False G23146
TU34462 other downstream 111888 25837143 ~ 25850576 (+) False G23146

Expression Profile