RNA id: TU34512


Basic Information

Item Value
RNA id TU34512
length 4459
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G23176
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26059352 ~ 26072689 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTGGTTAGATGTTCGCGCAAAACTCTTTACCCTGAAACGGAACGGTTTTGTTTTTGCCTCGCTAAACCAGCTGAAGCGCCCAGCGGAGTAAATAAAGGTGTTAAGGAAAGCGAGCAGGCGTAGACCTGTTTCTGTATGCCTCCAGATGCAATTTCGGACCACAGGCTGTGAGACGGAGACATCTTTAAGGATAATAGCGCTGAATTACTCGGTGTCGAGCGCAAACAAAGGCGCgcggaaagaaaacaaatgcgaTTTTGATCTCGGTTCCAAAGACAGCTGTTCATGTTCACACATCTATTATACTTACATAGAGAAACACCCCGGAAACATCGCAGCGTGAGCCGGGAACAAACGCAATACCAAAAAAAGGCCTTTTGATTCAATGTTTTAATAACTTTTGTAAGCaataacatatttgttttatagaaaataaacatcTCTAAGAAATACTATACACAATTATAATAGTACATCACATCTTACATTTACACAGCATCAAATACTTATATACACAATTACTTAGAATCAGGAATCAAATAATTAGGTGATGGTTTCTGTCGTCTCTATGCGCGCTCTTACCTGTTATACTGCAGTGAAGGCTATAGTATGTTAGTCACATATACATCTGGTTAAATGACTATGAGTTCTCGTTTTCAGTTTGCACGCCGTCTCCTGCATCATTTCACAAACAACACGAACGGAGACGTCCAATCCGCTCCGCGATGGAGATGGTTTCACATCGCCGAGGCTTTCGTGAGCTCGAGGTTCGACCCAGAATGAACTGTGACATTATTTACCCGCTCCGATGTCGTTTCAAACCGGCTTTGGCGCATTTGAGTTATTTAGAAGAATGTCCGAGCCGCCCTTTTCCGAGGTGAAAACGAAAGTCGAGGGGGACCAGAGGCGTCAAACTCCAAAACGACAGAAATGCACCATAAATACGCGTCGCGCACAGACTGAAATGtggctttgttttatttcaaggaggtttgaaatgacacgagggtggGTAAACGATAACagaattggatttttttttttttttggcgaacTATCCCTAAATGCTGAGCAGCTGACACACATAACATGAACGCAAGGTATTTTATTCATCCGGATGCACGCTTGGACATCTCAGTGGCGCTGTACCGTCTTCAAATGCGCATGAAAATAAGCCTACATCTCGGAGtagcaatatattaaaataatgcatttatatgttcTTCTTTTTTCGTGATATCAGAATATTTAGACCCGCAAAGCACACCATGTAcagtttcattattattatttttttttctttgtaacacGTAAGTGTCCGTTGAAATACATCCAGTGAGTGCATGTTGCATGACATCTTCAAATTTCAATTCCCTTTCCACAGCGGAAACGCGTCCGTGCCAGCCAGTGCTCGGGGCAGCAGGCCAGATCTGCCACCAGGTGTCCCCGACTGATAACATCCGCTCCAGAACACGGAATAAAATGGAAGAATGGCACATTCGGATTCATAACAAAAGCgtctttccctttttttccctcagcGTTTGGTCGTGAAGGTTGTCGTGTTCGGACCGGGCCGGATGGATTCGGGGGTGATCTGATCTCGGGTCGGTATTGCTACAGCGGTCTTTGTGCTTCGACTGAAGCCCCAGTTTTTCGTCGGTTGTTTTTGGGTGTCCTCGCAGCATGTCCTTGTCCTCCTGCATAGGTGACATTCACCGGTCCTCGTGCGCCGGGATGTTACATTGCctggaaaacacaaacatttcaaacGTGTAAGAGCTGGGGAAGATTTTGGAGCTTTTTGAAATATTGCTGTGTCATATACCACCCCCTCATATGTCTTAATGTACAGAATTAACAGCAAAGAGGGAAGTCATATTAGTTACATTCATCACGACTGAAGTGAATTTCAGTTATACAGCTTACAGTTGTTTACTCGAATGGAAACGAGCAATAGAATCTaaatcttttgtcatttttctttaactaacaaaaaacagCTCCTGTATGACATCTTCCTGGagggaaaacaacaaaacaaatagcaGCATAGAAATGGACTGGttgatttttttcaataaacaatattaaatatacatattaatatacacacatctacacacattACGGAAACATCAACAttagttttaaatgtcaaaattctTCATGAAactgttcattttcttttcataacaATAgagctttgatttattttattgtttgttggtTCAAATTTTAAAGGAAAccacattttaaacaacaaaaaaactagcAAATATAGCAACAATAAAactgctaaatatttaatttacacaatatttaatgtatagtaataattacaaaaatattatagttaattttagctaatataacaacaacaacaagacaatataatataataacaactattattattattattattattattaactttgcAATGGTTATTAAGTTAATATTACATTACTATTGGTAAacatattatgcataatatatgtaattatcaTTTTGCATCTGTAATCCGTGCATGACCCGTGCGTTATGATTGCGGCAGTAGAGGCGCTCTAGGCGCGTTGTTTACGTCGAGGCGCTTGCGCATCACGCGTCGCACGAGCTCTGTAATTGCCTGCGCCGGAGCACTGGCCGCTGCGCCGAAATGAAAGCTCCGTCGAGCCGGGATCTACAGCCGGCCCGCTCTCTGAAACACACTGCAGGACCGTTTCCTAATTGCGCTGGCATGGATGCTATTCTTGTTTTATGTATCTCTCCTCCTccgcagcttttttttttttttttttttttttttaccgtcgCGCTCGCTCTCTTTCCCTCCTCTGCTCTGGGTCCGATCCCTCGCTTTCTCTCTGATCTCTGAACTAATCCTCTTGCTCTTCATCGAGCTGGTAATCAGCATCTCTCTCACACCGCGACGCAACCGCAGCCCTTGTTATAGTGTGTTTGCAAGAAAGGACTGCATTGATATTCATCAAACGTTCTGCTGTTCCAAACAAACATCGGCGGTTAGTTCAGCACGAAACGCTTAACTTGGGATGTGTTTACATCTGGCAATATCACCCATCTCGGCTGATCCGATCATCACATCTGCAATAAATGAACTTCGAATGacttaaaatgttaacttttcTTAAATTTAGGAGAATCAGTTTCGGACTGACACTGATAGAATGTTCAAAATATGCAACGGGACATTAGCATAAGGTCTCTTTCTTCCATGTTTTGCATACTAAAAGGTTGATCTGGCATATATGTAACAATTTTTAACACCTCTGTGTGATTAGGAATGATTCTTGTGATGAGATTTTTTACTCAGAACCGAAATCCACCCAAAACTTTTACACTATCCTTTTGCCGCCTGCCCAGAACTGGTGTTTCATTCAGTAAATGCAAATTGTGCTTTTCGTTATGCAAGGACAGGGAAAAGAGCGCCATCGTTCTCTTGCCCTCCCTGCTGCGCTGCCCCCCTTCGGCCTGACCTAAAGCGTCGCCTGTGCTGCATTGCTGTTGTCGTGTTCTCAAGCCACGTGAACCTAAAACCGAGCTCGCCACTGAGTTGCATGTGAGCACAGAGGagaagaggaagatgaagaggaggaggagatttCCTGGGAGACCTGGACGGGGGTGGTATCTCTACCGCTCGCTTTCATTAAAGCGGCAAATTGGCATCCCAGAGACCCAAAGCCCTTAGATCCCCCTGCTGATGTGTGCTCTGCTTGTTCTGAACTTTCTCCTTtgctctgtttgtctgtctctttcCGTTCTCCTCTTCCTTTGTCGTGGGAGGGCGAAAGaggaagggagggagagagaggagggcgGGGTGTTTTGATCTCCATCCAGGTTTTGTCTTGCTGTCTCTGAGAGGAGGCTGTACCACTGCTGAAtatcatttctctttctctgccaTGCCCATTTTCTCGGTCTTTCTTGTTCAGTCTatctcttttcctttctctctccctgACCCACCGCTGGTGTAGTTCACAGATTACCTGTAGGTGGCACATGGGCCAACAAAATGGAACAGTGAAAGAACGAAGAGGCATGTGAATCTAAGCAAAGTGTTTTGTAGGCATAGATGGAGGCTGTTCTATTTCTCCACTCCAGTGCTGTAGGCCTGTCGAGGGATGGCCGCCCAGTcccatcagacacacacattattcatcTCACTAGCGCACCGTCTGAAGCCATCAGGCCCAAGAGCAACGTACTCCCCTCTTAGCAGCCTCCCGAGAGGCTTCACCATCCACTACTGCTTCAGTTGTGCTTGTTTGCTGCTCTGCTTGTTTACACAGTGACCCAAATAGGACCACTCGGGATCTATGCTTTAtgcctttaaaaatgcatacagtatgtgGTGGAATGTACATGCTGGCCAGAGTGAGCAAGTGACATGACTGATCATGCTTTCCCTTCCAAAAATTATAGCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34496 lncRNA upstream 106969 25950533 ~ 25952383 (+) False LOC122341778
TU34506 lncRNA upstream 111520 25947086 ~ 25947832 (+) True G23170
TU34489 lncRNA upstream 182201 25874314 ~ 25877151 (+) True G23160
TU34470 lncRNA upstream 206109 25847109 ~ 25853243 (+) True G23152
TU34453 lncRNA upstream 208776 25849901 ~ 25850576 (+) False G23146
TU34527 lncRNA downstream 58913 26131602 ~ 26133830 (+) True G23189
TU35027 lncRNA downstream 106543 26179232 ~ 26189925 (+) True G23508
TU35028 lncRNA downstream 106543 26179232 ~ 26191842 (+) False G23508
TU35079 lncRNA downstream 355530 26428219 ~ 26435848 (+) True G23550
TU35088 lncRNA downstream 420257 26492946 ~ 26497967 (+) True G23552
XM_043233804.1 mRNA upstream 1020 26041814 ~ 26058332 (+) True srebf1
XM_043233806.1 mRNA upstream 1020 26044229 ~ 26058332 (+) False srebf1
XM_043233807.1 mRNA upstream 2447 26041813 ~ 26056905 (+) False srebf1
XM_043234719.1 mRNA upstream 20459 26024217 ~ 26038893 (+) True LOC122341388
XM_043234718.1 mRNA upstream 71243 25986278 ~ 25988109 (+) True LOC122341386
XM_043234722.1 mRNA downstream 285567 26358256 ~ 26358813 (+) True LOC122341389
XM_043228183.1 mRNA downstream 291590 26364279 ~ 26378411 (+) True nptx2a
XM_043228175.1 mRNA downstream 291594 26364283 ~ 26378411 (+) False nptx2a
XM_043235252.1 mRNA downstream 384934 26457623 ~ 26491717 (+) True LOC122341701
XM_043225963.1 mRNA downstream 427321 26500010 ~ 26515546 (+) True tecpr1b
TU34502 other upstream 150176 25907165 ~ 25909176 (+) False LOC122341383
TU34498 other upstream 153017 25894657 ~ 25906335 (+) False LOC122341383
TU34460 other upstream 208776 25839626 ~ 25850576 (+) False G23146
XR_006250491.1 other downstream 588551 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 686405 26759094 ~ 26772903 (+) False ubald2
TU35297 other downstream 726122 26798811 ~ 26801395 (+) False srsf2b
TU35298 other downstream 726122 26798811 ~ 26801395 (+) False srsf2b
TU35299 other downstream 726122 26798811 ~ 26801395 (+) False srsf2b

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU377499 True 217 lncRNA 0.25 1 CI01000113 2712157 ~ 2712373 (+)