RNA id: TU34527


Basic Information

Item Value
RNA id TU34527
length 314
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G23189
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 26131602 ~ 26133830 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTCAATTAGCTCTCTGACTTCACAAAGCCTCTCTCTGTGGGGCTTCTTGTTAAAGTCAGCGGGGAGTTTCTTCTGACTTCTGACTGCACTCACATGCACCTTGTTACTCTCGGAGTAACTGTAAGGTGTATCGACTCTATCGCACTAAGTGCTTTTCAGGCCGTTGTCCAAAAAGTCTTGAGTGACATGCGCAGAGCGGCGAGAATATAATAAGAGTTGGTTTGGCTTTCTGACATCACAATGGTGCGAGTGCTCTCGTGCGTAAATGTGAAATGTGGagatgcttgtgtgtgtgtgtgtgaatgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU34512 lncRNA upstream 58913 26059352 ~ 26072689 (+) True G23176
TU34496 lncRNA upstream 179219 25950533 ~ 25952383 (+) False LOC122341778
TU34506 lncRNA upstream 183770 25947086 ~ 25947832 (+) True G23170
TU34489 lncRNA upstream 254451 25874314 ~ 25877151 (+) True G23160
TU34470 lncRNA upstream 278359 25847109 ~ 25853243 (+) True G23152
TU35027 lncRNA downstream 45402 26179232 ~ 26189925 (+) True G23508
TU35028 lncRNA downstream 45402 26179232 ~ 26191842 (+) False G23508
TU35079 lncRNA downstream 294389 26428219 ~ 26435848 (+) True G23550
TU35088 lncRNA downstream 359116 26492946 ~ 26497967 (+) True G23552
TU35137 lncRNA downstream 511441 26645271 ~ 26646452 (+) True G23594
XM_043233804.1 mRNA upstream 73270 26041814 ~ 26058332 (+) True srebf1
XM_043233806.1 mRNA upstream 73270 26044229 ~ 26058332 (+) False srebf1
XM_043233807.1 mRNA upstream 74697 26041813 ~ 26056905 (+) False srebf1
XM_043234719.1 mRNA upstream 92709 26024217 ~ 26038893 (+) True LOC122341388
XM_043234718.1 mRNA upstream 143493 25986278 ~ 25988109 (+) True LOC122341386
XM_043234722.1 mRNA downstream 224426 26358256 ~ 26358813 (+) True LOC122341389
XM_043228183.1 mRNA downstream 230449 26364279 ~ 26378411 (+) True nptx2a
XM_043228175.1 mRNA downstream 230453 26364283 ~ 26378411 (+) False nptx2a
XM_043235252.1 mRNA downstream 323793 26457623 ~ 26491717 (+) True LOC122341701
XM_043225963.1 mRNA downstream 366180 26500010 ~ 26515546 (+) True tecpr1b
TU34502 other upstream 222426 25907165 ~ 25909176 (+) False LOC122341383
TU34498 other upstream 225267 25894657 ~ 25906335 (+) False LOC122341383
TU34460 other upstream 281026 25839626 ~ 25850576 (+) False G23146
XR_006250491.1 other downstream 527410 26661240 ~ 26704452 (+) False pitpnc1a
TU35285 other downstream 625264 26759094 ~ 26772903 (+) False ubald2
TU35297 other downstream 664981 26798811 ~ 26801395 (+) False srsf2b
TU35298 other downstream 664981 26798811 ~ 26801395 (+) False srsf2b
TU35299 other downstream 664981 26798811 ~ 26801395 (+) False srsf2b

Expression Profile