RNA id: TU35581


Basic Information

Item Value
RNA id TU35581
length 479
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC122335546
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27281827 ~ 27282406 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AGCAACTTCTTGGTAGAGAATTGACTCAGCGATGCAGAGCTACTCAGTGCATGGGGGGATCCCGATGAAGGACCAGGGAGCCCCGATCGCCCAGCAAGTTGTGGTGTCCATGCCTGACCAAAGAGTCAGTGATGATATCATCTTCTCTACATTCAACCTTCACTTCTTTAACCCTTGCTGTCTGGGGTTCGGGGCCTTCTACAACTCGATAAAGGCCAGGGACAGCAGATATCTTGGAGACTTTTCAAAGGCACGTCAGTATGGCGCTCGAGCTCGCCGATTAAACATCGCTGCAGTCATTATTGGTTGCATCAGTGTACTTactgtcatcatcatcatcgttaCAATGAAGAACAACAGTGAAGCTACTTTACCATACCATTATCGTCAATAATTGCTGATTTTGAAATATACTTCTTGTCTGTATTTCCTTTGATTTTCCTAAAACCTTTCATTAAAACATATCTGTTGAAACTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35575 lncRNA upstream 29735 27249425 ~ 27252114 (+) True G23840
TU35362 lncRNA upstream 228055 27049688 ~ 27053794 (+) True G23713
TU35363 lncRNA upstream 228055 27049688 ~ 27053794 (+) False G23713
TU35394 lncRNA upstream 234324 27046938 ~ 27047525 (+) True G23733
TU35360 lncRNA upstream 237467 27029868 ~ 27044382 (+) True G23712
TU35606 lncRNA downstream 180593 27462999 ~ 27463302 (+) True G23869
TU35630 lncRNA downstream 190448 27472854 ~ 27475070 (+) True LOC122335648
XR_006248989.1 lncRNA downstream 190886 27473292 ~ 27475043 (+) False LOC122335648
TU35653 lncRNA downstream 248283 27530689 ~ 27533823 (+) True G23886
TU35690 lncRNA downstream 404488 27686894 ~ 27689858 (+) True G23909
XM_043228372.1 mRNA upstream 97257 27179078 ~ 27184592 (+) True nptx1l
XM_043235754.1 mRNA upstream 261956 27007494 ~ 27019893 (+) True cdr2l
XM_043235752.1 mRNA upstream 274046 26990895 ~ 27007803 (+) False recql5
XM_043235750.1 mRNA upstream 274046 26990896 ~ 27007803 (+) False recql5
XM_043235751.1 mRNA upstream 274046 26990904 ~ 27007803 (+) True recql5
XM_043232716.1 mRNA downstream 25234 27307640 ~ 27386062 (+) True LOC122334820
XM_043233156.1 mRNA downstream 153406 27435812 ~ 27438843 (+) True LOC122335316
XM_043233293.1 mRNA downstream 176385 27458791 ~ 27460139 (+) True rasd4
XM_043232694.1 mRNA downstream 192919 27475325 ~ 27488357 (+) True LOC122334777
XM_043232632.1 mRNA downstream 251438 27533844 ~ 27556530 (+) True LOC122334614
TU35317 other upstream 434492 26846723 ~ 26847357 (+) True G23695
TU35297 other upstream 480454 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 1233237 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 1310409 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 1424907 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1561435 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 1946347 29228753 ~ 29230230 (+) False cenpx

Expression Profile