RNA id: TU35622


Basic Information

Item Value
RNA id TU35622
length 1896
lncRNA type intronic
GC content 0.41
exon number 2
gene id G23873
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27704177 ~ 27816189 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gagcttttctgcagttCCTGAGAGCGGGTAACAGTCTCTGACTCCCACCTTTTGATTTAATGGTGAATTTTTTAACATCAAACTCATCCAGCACCTCCTCTGACATCAGGATTATGTTTGCCAAAGTTGAGCATTGTGCAAGAGAaagacgtttttttgttttTTTAAAAATGCCTGCATTTCTTCAACAACTGAGTTATCCTTCATCTCAATCAAACAGTGTGTCAGATTTATCCATCTTTCAGGACTAACATTGGTTTTTTGACCTCGTTTGAGGttgtggattatttttttaatgctctctgggtttttctctgtgtgtatcAGAACATCctgtaagagtctctgattggactCCAGTGAGATGCCATGAAGAAATCGAAGGAAAAGATCCAGGTGTCCATTTTTACTCTGCAAGGCTTTATTTATTGCTCCCTTAAGAAGCACATCCACATTCTCACAATGGGATCTGGACTTTCCTATCAGGAACATTTTCAGAACCTCactgtttttgtgtaaataacagtaaaacacaTACAGTGCTGCAAAAAACTCTTGAAAGCTCAGATGCACAAAGCTGTAAACCTTCCTTTGATGAATCACAGACTCCTCTCTAAAGATCTCAGTGCAGATCCCAGAATACACTGAAGCATCAGTGACGTCTATGTCGCTCTCTCTCAGGTCCTCCTCATAAAACATCACATTGCCCTTCATTAGCTGATTGAAAGCCAGTTCAGCAAGTTTCACAACCACTTCTCTGTTGGACTTCAGGAGTTTCTCTGAATGTCTCCGTTCATACTTCTGGTTCCTCATGTTTGTTTGAATGAGCAGGAAGTagatgtacatttcagtcagagtttgagggATTTCTGCATCTTGTTTCAGGATGTTTTGAAGCACagtggctgagatccagcagaagacggggatgtgacacatgatgtGGAGGCTTCTTGCTCTTCTGATATTTGAGATGATCCTGCTGGCTTGATGCTCATCGCTGATTctcttcctgaaatattcctccttctgaggGTCACTGAATCCCTGAATTTCTGTCACACGGTTTATGTAGTCAGaggggatctgattggctgctgctggtctggtggtgatccagatgagagcagagggaagtAGATCTCCTTTCATCAGGTTTGATATCAACAGACCCAATGATGATATCTGAGCCACATCAGAAACTTTCTGACTGTCTGAAAACATCAGTGAgattctgctttcatccagaccatcaaagatgaacacaactcTACATTCATCGTAAATCTTTGGGTCCAGATCTTGAAGTTCAGAATGAAAGTCCagcagaagtctgtgaagactgtactgatgatctttaatcaagttcagctctcgaaatgtaaaaacaaacatgaaatctacatcctgattggcttttccctcggcccagtccagaatgaacttctgcacagagacagtttttccaattccagcgatgcctttagtaagaacagtctttattttgtttttcatctcttttctaATCTCCTCATCTGCTGGTTCATGTGAAGGATTAAAGATGTCATTGCAGTTGATTGGAGTGTCTTGAAgtatcctgtaacctttctcaATCTGTAGCacctcatgttcttcattcactccttcactctctccctctatgATGTACAACTGTGTGTAAATCCTGTTCAGGAGGGTTTGATTCTCTTGTAGTTTGACTCCCTCAAATAAGCTTTCGTACTTTTTCTTCATGCTGGTTTTGTGCTGGTCTTTGACTCTCTGTAGATCATTAAGTACTGGTTGATGAGAATCGAGCTTCAGATCTGCTTCTGTGTCAGAATGACTGAAGTGGTTCTGACTGTAGGAGTATGGGAAGGTCTGTGAAGGTGCCATACa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35697 lncRNA upstream 33783 27719185 ~ 27719656 (+) True G23915
TU35695 lncRNA upstream 38548 27713538 ~ 27714891 (+) True G23914
TU35690 lncRNA upstream 63581 27686894 ~ 27689858 (+) True G23909
TU35653 lncRNA upstream 219616 27530689 ~ 27533823 (+) True G23886
TU35630 lncRNA upstream 278369 27472854 ~ 27475070 (+) True LOC122335648
TU35716 lncRNA downstream 125993 27942182 ~ 27945216 (+) True G23931
XR_006248990.1 lncRNA downstream 218211 28034400 ~ 28036158 (+) True LOC122335654
TU35738 lncRNA downstream 410886 28227075 ~ 28235536 (+) True G23953
XR_006248988.1 lncRNA downstream 503521 28319710 ~ 28320156 (+) True LOC122335640
TU35756 lncRNA downstream 512276 28328465 ~ 28329411 (+) True G23964
XM_043233179.1 mRNA upstream 23547 27728274 ~ 27729892 (+) True LOC122335347
XM_043233192.1 mRNA upstream 23547 27728324 ~ 27729892 (+) False LOC122335347
XM_043233185.1 mRNA upstream 23547 27728336 ~ 27729892 (+) False LOC122335347
XM_043232585.1 mRNA upstream 144302 27574258 ~ 27609137 (+) False LOC122334574
XM_043232600.1 mRNA upstream 151213 27574258 ~ 27602226 (+) True LOC122334574
XM_043233349.1 mRNA downstream 135562 27951751 ~ 27952457 (+) True LOC122335462
XM_043232688.1 mRNA downstream 220231 28036420 ~ 28068099 (+) True LOC122334736
XM_043234723.1 mRNA downstream 500411 28316600 ~ 28319709 (+) True LOC122341391
XM_043232766.1 mRNA downstream 776615 28592804 ~ 28650650 (+) False LOC122334878
XM_043232783.1 mRNA downstream 776620 28592809 ~ 28650650 (+) True LOC122334878
TU35581 other upstream 471033 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 906082 26846723 ~ 26847357 (+) True G23695
TU35299 other upstream 952044 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 699454 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 776626 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 891124 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1027652 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 1412564 29228753 ~ 29230230 (+) False cenpx

Expression Profile