RNA id: TU35630


Basic Information

Item Value
RNA id TU35630
length 914
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id LOC122335648
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 27472854 ~ 27475070 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CGGTAATCTTCTTAGAGAGTTCCGTGCACGCGGGCGTAGAGTTGGCGGAGAAAACGCGATAACCACTTTTAGCCACGTTCATGTTTAACCGACTTAAGGTTACCGCTGAGACGAACGAGACGCGTGCTGGTCTAACGCTACACGGTCGCGCGGTTTTGTCGCCGTCGTACACGGGAACGCGAATGATGTAACAGCCGTTGAAGAAGTCCGGCGGCTGCTGTGGAGTTTACTGCTGTTTCCAAACAACGACGAGTTCTTCTGCGCGAGCTCCGCCGCCGAGGACTCGCCGCAGCCGCCTGCTGGACGGAGGTCACCGCTCCACACAGGAAACTCTCACGTCGTGTGAAAGAAGCGTGTTGGGTGAAAACACTTAAGCTGGGTCGAGCTCACCGAGCGTGTGCTGGACTTTTattcgataaaaaaaaaatctttacttcTTGTAAACCTGTGTGGAACACTCAACGCCGGAGACACTGAGGCGAACAGAAGAGTTGGACTCTATAATAATTAACGGCTCATTGCAGTGAAACGCTTAATGAGATGTCGCTGAGGTTTCTTCTCCAGAGCTGAGggtcgTTGGGAGCGAGGACAGAGGAGCGAGAAGCTgagctgttttctatgtgaaatgtattttagacTATGCATATAGAAACATTATGCCGAATAATTTTAGTCGAGAGCTTCACTTTTCTTATGTTTTGTAAAGTTGAAAACAAGCAAGCCGTAATGTTCATGTGATCAAACCTTGCTTACAGCAGGCAGAATACAAGTTATGATGTGTTTTAcaagaaattaagtttttagaTACTTGTGCTTCATAAAGTAAATGTACATGTTATAATAACCATGTTTAAATTATTCCAAATAAACTTTGCTTATAAGCGTGAGCTACTGGTTTACATATGGGCCCTACA

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway
ko04110 Cell cycle
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU35606 lncRNA upstream 9552 27462999 ~ 27463302 (+) True G23869
TU35575 lncRNA upstream 220740 27249425 ~ 27252114 (+) True G23840
TU35362 lncRNA upstream 419060 27049688 ~ 27053794 (+) True G23713
TU35363 lncRNA upstream 419060 27049688 ~ 27053794 (+) False G23713
TU35394 lncRNA upstream 425329 27046938 ~ 27047525 (+) True G23733
TU35653 lncRNA downstream 55619 27530689 ~ 27533823 (+) True G23886
TU35690 lncRNA downstream 211824 27686894 ~ 27689858 (+) True G23909
TU35624 lncRNA downstream 229107 27704177 ~ 27816189 (+) False G23873
TU35695 lncRNA downstream 238468 27713538 ~ 27714891 (+) True G23914
TU35697 lncRNA downstream 244115 27719185 ~ 27719656 (+) True G23915
XM_043233293.1 mRNA upstream 12715 27458791 ~ 27460139 (+) True rasd4
XM_043233156.1 mRNA upstream 34011 27435812 ~ 27438843 (+) True LOC122335316
XM_043232716.1 mRNA upstream 86792 27307640 ~ 27386062 (+) True LOC122334820
XM_043233411.1 mRNA upstream 190448 27281827 ~ 27282406 (+) True LOC122335546
XM_043228372.1 mRNA upstream 288262 27179078 ~ 27184592 (+) True nptx1l
XM_043232694.1 mRNA downstream 255 27475325 ~ 27488357 (+) True LOC122334777
XM_043232632.1 mRNA downstream 58774 27533844 ~ 27556530 (+) True LOC122334614
XM_043232590.1 mRNA downstream 99188 27574258 ~ 28072577 (+) False LOC122334574
XM_043232585.1 mRNA downstream 99188 27574258 ~ 27609137 (+) False LOC122334574
XM_043232600.1 mRNA downstream 99188 27574258 ~ 27602226 (+) True LOC122334574
TU35581 other upstream 190448 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 625497 26846723 ~ 26847357 (+) True G23695
TU35299 other upstream 671459 26798811 ~ 26801395 (+) False srsf2b
TU35969 other downstream 1040573 28515643 ~ 28560324 (+) True G24115
XR_006248835.1 other downstream 1117745 28592815 ~ 28647092 (+) False LOC122334878
TU36019 other downstream 1232243 28707313 ~ 28708599 (+) False LOC122341395
TU36055 other downstream 1368771 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 1753683 29228753 ~ 29230230 (+) False cenpx

Expression Profile