RNA id: XM_043234727.1


Basic Information

Item Value
RNA id XM_043234727.1
length 532
RNA type mRNA
GC content 0.52
exon number 4
gene id LOC122341395
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28707031 ~ 28708608 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AATGGATGGTGCCAGAAAAGTCGCTCTGACGATTAACCCCTTCACTGCTTTCGTGACCCTGATCCTGCCCAGCGGGCTGATACTTCTGGCTGACCTGGTGAGCTTTGCTCTTCCTTTCGAAGGAGGAGAGCGCAACTCTTTCAAAGTCACTTTGGTCCTGAGCTTCACCATgttcctcctcatcctcagcGACCACCTGCCCAACGGCGGCCACTGTAACCCCCTCCTCTACTACCACTTCAGCTTCTGTCTGGTGTGTTTGGTCATGAGCATGCTGGTCTCCATAGTGCTAACACGACTGGCCGCAGACGACAGCTTCTTGGTTTGCAGAGGCTCCGCCAAAGTTCATCCGTCAGACGGCGGCAAAGCAAATGACAGCCTTGATCGAGAGAAAGATACAAGTGCGATCACAACAAAGTCTGGCCACCCGGCTTCAGAGACGACTACACTCCAGAAAATAGCCAACCTTTTGGAGACCATGGATGCAAGAGAAAAGAAGATTGAGAGCAAAGTGGCATTCGCTACCTCCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36004 lncRNA upstream 1887 28704030 ~ 28705144 (+) True G24132
XR_006248991.1 lncRNA upstream 312493 28393741 ~ 28394538 (+) True LOC122335662
TU35756 lncRNA upstream 377620 28328465 ~ 28329411 (+) True G23964
XR_006248988.1 lncRNA upstream 386875 28319710 ~ 28320156 (+) True LOC122335640
TU35738 lncRNA upstream 471495 28227075 ~ 28235536 (+) True G23953
TU36022 lncRNA downstream 172 28708780 ~ 28715865 (+) True G24138
TU36023 lncRNA downstream 1298 28709906 ~ 28716193 (+) True G24139
XR_006248999.1 lncRNA downstream 9424 28718032 ~ 28719109 (+) True LOC122335688
TU36034 lncRNA downstream 49087 28757695 ~ 28831744 (+) True G24146
TU36039 lncRNA downstream 93656 28802264 ~ 28802611 (+) False LOC122341400
XM_043233130.1 mRNA upstream 48542 28653093 ~ 28658489 (+) False cacng5b
XM_043233148.1 mRNA upstream 48542 28653095 ~ 28658489 (+) False cacng5b
XM_043233138.1 mRNA upstream 48542 28654085 ~ 28658489 (+) True cacng5b
XM_043232794.1 mRNA upstream 56381 28592809 ~ 28650650 (+) False LOC122334878
XM_043234728.1 mRNA downstream 3095 28711703 ~ 28714513 (+) True LOC122341396
XM_043234729.1 mRNA downstream 11939 28720547 ~ 28721944 (+) True LOC122341397
XM_043232830.1 mRNA downstream 27391 28735999 ~ 28737619 (+) True LOC122335069
XM_043233439.1 mRNA downstream 76924 28785532 ~ 28789067 (+) True LOC122335596
XM_043232811.1 mRNA downstream 84444 28793052 ~ 28797759 (+) False LOC122335014
XR_006248835.1 other upstream 59939 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 146707 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1424625 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1859674 26846723 ~ 26847357 (+) True G23695
TU35301 other upstream 1905636 26798811 ~ 26801395 (+) False srsf2b
TU36055 other downstream 135233 28843841 ~ 28846292 (+) False LOC122335482
TU36269 other downstream 520145 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 683310 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 731341 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 790915 29499523 ~ 29500119 (+) True G24436

Expression Profile