RNA id: XM_043233367.1


Basic Information

Item Value
RNA id XM_043233367.1
length 1604
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC122335482
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28843814 ~ 28846375 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCTAGCATGTAAATAACAGCAACCGCGGTGGTTTGTTTGGTGTCGCGCAGGCTCATTAAATAAACGAGTAACCGGCTTATACGTACAGAGAACGATATTATATCTGCTACGTTCGTGAAAGTAAGTCTGGAAGAAGAATAACTTACAGCGTTAAATTAGCAGAACGCTTGAATTTACAGCTAGTGAAGTGTCAGTTAGCACCCAGCTATGATAGAGACTAGCCGGAGGAGTTAACGTTAGAGCTTGACACGTTTATTACCGTACAATCAGCTAAACACGATTTTCactcattttgatttataaTCCTCTCGTTACCGATTCACAAGCTCGCTTTCATTCGGACAGGGATGAGAGCGTTTAGTGTCTAAATGTGTTTTGCTGTGTTCAGTGTAGCATGACACAGCAGGGAGTTGATCAGAGCAACACAGCTGATCCAGGAGCGAATGCTGCTCGATAAAACGCTCAAACATTCGAGACCGTTATCATCTGCTCTGGGATTCGCAGAAATGCTTACAGAAAACAGGAAACGTCAGCGCGCCGAaggtgatgatgaagatgctCGGATGCCTCAGGCCAAACGACTGAGTTCAGCCCTCCAGAGCTCGGAGACGGGTAGAGAATCGTGGGAGTCTGAGTCTTCCAGCAGCGAGAGCAGTTGGATCAGCAGCCCGGATCACGCCGcagggagcagcagcagcagcagccattGTGGAGTGGACGTCGTCGGGCCCCACAGCAGTCCCCGCAGTGCCTCCAAGCAGTCGGACCCCGCGGACCCGCTGTCCTACCAGCACATCAACCGCGTCCTGAGGGAAGCCCATTTCCACAGCTTACAGAGCCGAGCTCAGTCCAAGCACAGGTGACTttcagggacacacacacacacaaagccccCCCACCCGGTAGCGACCCCTAGAAGACAGGGTAAAACTTCTTCATCTCCATCCTCATTCAAACCTGCTCCCACTTTCTAGATCTCTCCGCTAGAGCTCATGTTATGTTGGCGTTTTACTGGATGGAAACCATGCCCTGGGTACTGTAAGCTCTTCGACTAACCAGAGCACAAAAGGGTTCATTGTAAGCAATAAAGGCTTGACTACGATGCAAACTTTTGTGACTTTCACACTGTGTACTTTTCTTCTGAAAACGGCTGTATCGAGATGCAGTTCGGTGGGGATTTGCACTTGGGAATTTATGTTGATCGGATATATCGATGTGGACCATATAGCAATTCAGCTGAGCACGTAGACGGGAGGCATTGACACGGCAAATCTGATCGGCGAACTCCATTGCCGTGCGTAGAGGAAGCCAGTCGGTTTAATATCAAAGACGGCGCCGATGGGCAGATCCGGGGGAATTTCGTTCTAATCTTCAGGTTCCCGCCTGATCTCTTGCCTCCCCGACCATCACCGAAGCCGGTTGCTCATCCAGGCATCAGGCCTTTGAGACCCCCgcggaggtttttttttttgcgtgccGTTCGAATTCTGCATTTAAAGATTGTCGTTTATTTTACTATACCTTTTTGTATTGAAAgatgtacattacattttacattcagatcatctacatttctaaataaagatGGATGTTCTTGAGCAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36034 lncRNA upstream 12081 28757695 ~ 28831744 (+) True G24146
TU36039 lncRNA upstream 41214 28802264 ~ 28802611 (+) False LOC122341400
XR_006248999.1 lncRNA upstream 124716 28718032 ~ 28719109 (+) True LOC122335688
TU36023 lncRNA upstream 127632 28709906 ~ 28716193 (+) True G24139
TU36022 lncRNA upstream 127960 28708780 ~ 28715865 (+) True G24138
TU36060 lncRNA downstream 8588 28854963 ~ 28855171 (+) True G24169
TU36061 lncRNA downstream 12510 28858885 ~ 28859136 (+) True G24170
TU36063 lncRNA downstream 15898 28862273 ~ 28862502 (+) True G24172
TU36065 lncRNA downstream 18269 28864644 ~ 28864859 (+) True G24174
TU36066 lncRNA downstream 21241 28867616 ~ 28868036 (+) True G24175
XM_043232741.1 mRNA upstream 13089 28826613 ~ 28830736 (+) True otop2
XM_043232840.1 mRNA upstream 25723 28816578 ~ 28818102 (+) True amn
XM_043234730.1 mRNA upstream 34997 28798314 ~ 28808828 (+) True LOC122341400
XM_043232816.1 mRNA upstream 46066 28793831 ~ 28797759 (+) False LOC122335014
XM_043232488.1 mRNA downstream 22704 28869079 ~ 28933084 (+) False LOC122334478
XM_043232444.1 mRNA downstream 22705 28869080 ~ 28933084 (+) False LOC122334478
XM_043232460.1 mRNA downstream 22705 28869080 ~ 28933084 (+) False LOC122334478
XM_043232496.1 mRNA downstream 22705 28869080 ~ 28933084 (+) False LOC122334478
XM_043232503.1 mRNA downstream 22705 28869080 ~ 28933084 (+) False LOC122334478
TU36019 other upstream 135226 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 196733 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 283501 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1561419 27281849 ~ 27282406 (+) False LOC122335546
TU35317 other upstream 1996468 26846723 ~ 26847357 (+) True G23695
TU36269 other downstream 382378 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 545543 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 593574 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 653148 29499523 ~ 29500119 (+) True G24436

Expression Profile