RNA id: XM_043232460.1


Basic Information

Item Value
RNA id XM_043232460.1
length 9478
RNA type mRNA
GC content 0.52
exon number 29
gene id LOC122334478
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 28869079 ~ 28933084 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GATTCGGGAGCCCGACCAATCAGCGCGCGTGTTTACTCTCGCGGAGCTGAGAGGCTCGATCGGCGCAGGACAAGAGAATCGCCGCTCCGAGACTCGACTCTCGACTCCAGTGGCCTAGAGAAGCCCGAGACCGGCGAGCGACAACCGCTTCCATCGTATGAGGGGAATTAGGACTGAACCActgaaatatgctttttaaaataagcgTCATTGCTCCGAATAATTTTCTtgatttctaattaaaattatttattgttatgcaAGGATATAACATACCAaAAAGATGATTGAGGACTTCAGCCTGAGCAGGGGAGGCGAGCTTTCCGCTGAAGCGAACGCAGACGGATTACGGTACAAAGGCTTCATCTGATTTccgcttgtttttttttttttttttggggattATATACACGTCGGCCGTTTTCTTTGGAATGGAGGGTCGTGATTTCTCCGCTCCGGCGCACCTCCTCTCAGAGCGGGCCACTCTCGTGCACCGCGCCGCCTCGCGCATCTCCTCGTCCGGCCACGGCTCCGTGCAGCATGCGCCTCACTTTCCGGCCGGGAAATATTATCCGTCTCACTTACCGATGGCGGCGCATTCAGGCAGTGGACTGATGGGCAATTCCTCAGCCTCCTTCATGGGGACGTTCCTGGCCAGCAGTCTAGGCTCCCCTCCCTCACACCCACCACACCCCTCCAGACCACCGTCCtctccctcctctcctccttATCGTGGGGGTCCTCACTCCAGCGCCTCTCAGATCTGGTTTCCCCACTCACATGAAGcagTCCCAGGGTATCCTCGCTTCTCAGGGAGTCTAGCCCACACCTTTCTTCCCATAAGCCATTTGGATCACCATGCCAACAGTGGGGTTCTTTATGGACAGCATCGTTTCTATGATACACAAAAAGAGAACTTCTATTTAAGAAGCCTCCCGTCCCAGCCCCCACTTatctcagccaatcacaacatCCAGCCGATGTCAAGGACAGGTTCAGGACAACCACAGGGCTCATGCAGCAGGGACAGAGATGCAGGAAGTGGGATGAACCTACAAAAGGGTCTTAAAGAGCCTAGCTTAGAAAGAGGTGTGGTTTCAGCAGGAAAGGACAAAGACAGGCCTAGTAATAAACATGATACTAAAGACCGACATCACCACCAACTACCCCATCATCACTCCCATCAACCCCAGCTCCACCCACAACATCCAGCCACTATGGAAGAGATGAATGGCAGGGGGCACAAAGCCACTCTGCCTATGGAGTATAAGGAACATCCACAGAGCATGGGAAAGCCTCTTAGTGCCTGTCTGCTCAATGGAAAGATGCTAAATGGGGACCATGGAACAGTAGCAAAAGGCTCCATGGCTACTTGTGGTGGGGATGGGGTGGGCAGAGGTAATGTAGGGTCCAATAATGTCCAAAACAGACATGTGGGTGGTGGCACTAATGGGCGCTGTGGTAAAGAGGCGATAAGTGGGGAGATGCGGATCAGTGAACAGCCTTCTACAGACTGTCTGGAGAGAGGTCAGACACTGCAGCATTCTTTGTCCTACTCAGTACCTCCTCCACTGCCCATGGCTGCTGGAGGTGGGCATCCAAGTGGCTTCCACTGTCTGCAGCTCCATCCTGGTCACCCCCATCACCCACACCAAAATCGCCACTCTCACCATCACCCTGACTTTTTCTGCCCTCCACCGCCAGCCCCTATGGGAAATCCTTCCTTACATGATAAAGGAATCAATAGTGGTGGCTGCAGAGACCCCAAAGTGACTGGAGCCACATTTATTCCATCTGTTAGCCACCTTGGGGAGAAAAATGGAGGCTCCTTCCAGATGGGCAGCTCTGAGTGCCAGGGGGTTGGGGGCGGAGGGAATAGTGTCAAGGACAAGGCCATGGAAAAGACTGGCAATGGGGGGCATCATGGTAACTGGCCCAGGAAACAACAGCATCAACCTCCGACCCAGCAGCAGCATCCCTACAGAAAAGCTGAAAAAGGCCCTGACTGGATGCACAACCACAACCACCACCATCATCTacagcaacaacagcagcagcagcagcagcagcagcagcagcagcagcaaagtCATTCCCAGCAACACCAGACTGTGCGCTCCCGCAGTGCTGACTGCATCAACAGTATGGAAACAGACATGTTCAGATCTACTCTGACTCAAGAGACAAAGGCTGTTCATCCTCTACCCAACCAAACCAACGCCAATTCCCAGCCCTACAGAGACTGCTCACACTCGGGGCCTCCAACCATTCCCTCACCTCTTGCTGGGAAGACCATGACCCAGCACACGGGTGGAGGAGGACATGGAAGCTGCTCCATGCAGCGAGATGGACAGAAGGTTGCCCGAATTCGCCACCAACAGCACAATAGGGCTGTCCCTGATACCCCTGGCACAGACATGGCCCAGGTTAATGGGAACCAGGAGATGAAGCGGAAGATTGAAATGTCTCCTTACAGCTACAACAACAATGTGCAGCATCACCCACATCAGCAGACATCAGTGCCACCTTGGGCAATGCAACCTCATCACATCCACTCTGAAGATAACCAGCACAAAGCTTACATGGACCCTAACAGTGGAGCTGCCAATAACAGACCGTCCACACAACAGCAGCACCAGACGGCAGGAATGggtcctcctgctcctcctcccCTTCATCCCGCTCCTCCTCAAAATCAGCAGGAGGTCACAGGCTCACAAGGAGAGAACAGTGCCATGAAGAACCTTCTGAAGTATAGCAACCAGCAGCCTCTCCTTTTGTCCCAGAAGAGCCCATTTGGAGGGCTTGGGAACCTCAAAACAGCAGCTAATGGCACCAGCTGCTCTATACAAGGAGGCAAGCAGACCCTACCCTCCAGGAAAGGCCAAAGCCATGAAAGTGAGCGAGCTGATTGTGGTGGACATGGCAGAGAGATAGGAGATGTCCCACATGTAGAGGGGGAGGTGCGACAGCCTCCGGTAGGGATTGCAGTTGCAGTGGCAAGACAGAGAGAACCTCCATGCCAAGCATCAGGCAGCCATCCCAGCAGCCGACAGGGGCGGGTGCACTCCACCATGAAAGGCACTCCACGCTCCATGTATTCTTCGGATTCAactggagaggaggagaggaaaagGATGAGTGTAGAACACATGGGCCACCGCTGCCTAGAGAGAGAACGAGACGTGTATATCAGGGATAACAAGGAAAGGGTGGAATTTGCACACATCCATCCCTCAAACAGTTGCCATGGTGACCTCACCTCTCACATCATGGTGCCAGGTGGCACTTCCATGCAGTCCAGCCAATTAGGAGACCCAGCTGCACATACACACTCTGCTCACCACCACTGGATGCCACGTACAGGAAGTCCCTCCCTCTGGATGACGGGTCACTCCTATGGTATCGGCCACACAGCTCTGCATCAGAATCTCCCTCCTGGGTTTTCTGCAGCCATGCCTGCTCCTCTTCAGCCAGTTCTACCCCTGCCCCAGGACCCCTCCACCCAACTAGTGGTGCTTCCTAGTGAGCCTGCCACACACCCGGCTACTCACCTTGATGTGATGGAGCAGCCTGGCCTGTGGCCCCCAGTCTACAGGGCCCGAGGGGCCCACTCCCACATGCAGCATCCTGCTGTGTATCCTCGCTCGCAGTTTCTACGGCAACAAGAGCTTTATGCTTTCCAGCAACACCAGCAGCTACAGCATCAGCAACACCCCAGCCATCACACTCCACCACCTCCATCACACAGAGTAGCAAACAACATAGAGCTGCAGCAGAGAGCCACAGCTGACCACAGTCAGGTGCAAAAGAAACCAGAAGAACATACCATGGAGCTAGAAGACATTTTGTCTGACCCCCGGACACCTAAACCTGCTAAGTGCTATGCCTACGGTCCATCCAACCAGACCTCCTCACCCCCCAGGGGCTCCACTGCCCACTTGTCTCCTTGCTGCCAGTCCCCTTGTATGCGTCCTCACCCTAAAAGCACACCCTCTACTCCCTGCCCTGCCCCAAGTCCAGTAGCTGTGACACCCCGCTCACCAGCCATCAGCCCTTCTCCATCACAGATGCCCAAAACTGTTGAGTCCCAAGAAAAGAGAGTGGAAGGGCAGCCACCGCAAGACTATCCTCAATCTATGGAGCCTGATCTGCCACCTGGATATACCTATCCAGAAATCAACATGGGATATAGGAATGTCCCCTCCACTCAAGACGTACAGCTGGCAGAACCTGCTGATCTGGAGGCTGTTCAGACTGAACCTGTTGAGCATCCTCCTCCAGCTCTCTCCAGCTTGGGAGAGGGACTAGAATGTCATGCAATGGTGAGGCCACTCCAAGAACCACAAGAGCCAACAATGGACGTTGATGCCACCGGTCTAGTTGAAGAACAGCCTGAGGGTGTGTTTGTGCAAGGGAAGGATGTTGAGGCAGTCATGGCCATGGGCTGTTGTGAACCCATAGAGAATAATCAGGAAAAAGAGCATGAAGAGATAATTTGCACACCTGCTGAAGTTTCAGGCTGTGAAGCAGGACAGATAACTACCCTATCGTCTGAGGAAGTAATCCATCAAGAAGAACCGATTACTGCCTTTGAGGAAGAAGCGGGTGAAGATATACCTCCTCAAGAGAGTGAAGTTATCGACACACTGAAAAATCCAATACCACAACCATGTGTTTCTGATTGTTCAGTCAGCCAGCTGCCAAACACCACTGCCCAAACAGATGTTGCAGTGGTTGTtgaagaagatgaagagaaaAACTATGTGAAGGTTTCATCTCCAACAATGAATAGCAGTTCCCAGAGTCTCACTGCAAGTTACTGGAGTTTGGAGCTCCTGATTGCAGCAGCGTTCTGTGGGGACTGTCCTCCTCCCTCTCCACCCTCCCCTTACCAATCCCAAAGATACTGTGGCCCACTCAACTCTGCCTATCATGGCATGGAATTGCTAAGTGAGCTGGCTGATCTGGAACTGCAACGTTTTCACCAAAGTTGCGGTAAAACTCAAGAAGATCAATGGATTTTTGACCTGCAGAGTCTTGCTACTTTGGCAGCAGCTCGTGCCCTTGAATTGGACTCACAGGAAAGCATCACCACAGATGCTGAGCAGCAGTTTCCTGCTCGAAAAACTATCAACTTGCGCAGAAAATGCAGCTGGACACCTCGCCATGAACCGGTTTGCCCAGTGAAAGGTACCATGGACAGTATGGATGGGCAGGAGCTGGCTATGCGAGTGAGGTTAGCAGAGTTGCAACAGCgttacaaagagaagcagaaggAACTTGCTAAACTCCAGAGGAAGCATGATCACCAgaaAGAGGAGACTCCTCGCAGTCCAGCACGTCGTGGACCTGGTAGACCGCGCAAACGCAAATCAGTCCCTGGTCTTAGCTCCGGGGCCCTTAATGAACCCcagaaaaaagtaaaATTGGTGGGGGCGGGGCTAAGTCCACTAGCAGAAGAGCAACGGGGTGGGGGTGAATcgcagaaaaaaaaggaaaaattgtCCAGCCGAGGATTTGGACGCCTTAGCTCTACACAGATGAAGTCACAATGTTATCGGAAGAACAGCACACTTGATCAACAAATAACTCAACTCAAGCAGAAGGTCTCAGGTGGACGACATTCATCTGGAGCTGTGTCAAGAGACCCTGAGTTTTCCTCAGCATCTAAGAGTCTATACTCTGGCCATAATAACTCCAAAAGAGATTCCACACAACTCACCAATGAGTCTGAGAGCCTGAGCGATACAGCCACGAGTGGGGACAGCAGGACACAGGAGTGCTGGAAGAGGCATGATCCAGTGGCAGTTAAAAAGGAAAGGAAGAAAAGTCTTGGATCAGCAGCTTGTTTGCAGCAGCCAGGGGCAAGGATCACGCAGGGCAGGGGACAGGAAGTGGACGAGGACGGGGAGACGTCCCCCCCTGAGAGCGAGTCCTCTGAGCAAGACGAAGATGAAGAGGAAGGCAGTTATGCCAGTGAGGAAGGCCAAGACATCAAAGCACCGACGTTTAGAGATCTGCCATTCAGTCCGACTATTACAGGCCCCTCCACTTTCTCTGTTGTCAAACTGGAAGCCAATCAGAAGGCGAAAATTAAGCGGGAACGGCAAGAACTTTATGGATCTCAGTTTCGGGCTATAACAGATGGGGACGTGAAAGTAAAACGACGACCCCCCTGTAGATCCGTCCCCATGACTGTCTCCAAACCACCAGGAGTTAGAAGGCGCCCAGGGAGACCCAGACTGCAGGACAAACGCTGGCCTGGGATCACAGGCAGGCCGGGTCATTACAGAAAGAGTAGCAGTCTTCTCTCATTtcccagcagcagcaacagcgAGAGGCTCAAGAGAGCCACTCGGAAGAGCTCCATGCTAAGAGCCACGAGGAGAACTTACTGGTCGACCGAGGCCCAGTCTCAAGACAGTGATGATAACGGCAGCACTCGGAGAACCAGACTTCGAGAGCGATTCAGTGTCTGTGCTGCTCCTGTGGTTCAGTCGAAAGGTCGAGCGGTCAGCCGTCTGATGGAGAGTTTTGCAGCAGATGAAGGCTTCCACCTGGGTGAGGACAGTAGCTTCTCAGAGGAGGATGAGAGAAAGGTGTCTTCGAATAGCAGAAGTGTTCCAGCTCCTCCGAACTGTGTTCTGACCAAAGAGCTCCTGACAGATGGACTCAAAGTTCTGATTTCCAAAGAAGATGAACTACTGTATGCTGCTCGTGTGCAACCCCTGGAATCGCCTGATGTctaCAGTATTGTTATCGATGGGGAGAGAGGAAACCGACCCAGAATCTACTCCCTGGAGCAACTCTTGCAGGAAGCCGTACTGGATGTACGCCCTGACACTGAGGCTGTGCTAAAAGAAGGGACTAGAGTGTGTGCTTACTGGAGTGAGCGCTCACGTTGTCTTTACCCGGGATATGTGCAAAGAGGAGGCGATGAAACTAAACCTGGTGGAGTTATGGTGGAGTTTGATGATGGAGATAGAGGGTGGATCTCTTTCTCCAATATTCGCTTTCTTCCTCCCGGTTACCAAATCCAGTGTGCTGATTTGAGTCCTGGACACATGTCTGAGGGGCAGCTTGACAAAAATGGCTCCATGCAAGAAAACAAGACTCTGAGTGAAAGGACAGCAAGAACGGACAGATTCAAAGCTCAGGAGAAGCCTGTCAGAAGACCAGGGAGGCCTAAAGGTTCAGGGCTAAAGAAGTCTCTCTCAGACAGTGTAGCCAAGAGCTCAGCACCTGCTGTTACATGGCCATCGGTGGCTGCACCCAGGAAGAGAATGTCTGTTAACTTTTTTCAACTGAATGGCTTAGCCTCGAAGAAGGCCTTGAAAGGCAGGGTGGCGGAAACATCTTCTCGACCTTCATCCTCCATGACGACACCAACCAAAGGCCTCTTTAGCAGTAGCTCCTTTGAGGTTGACTCCTTCAGCAGCATAGCTAATGGGTATTCATCCTTTGGAAGCCAGACATCTGGGATTTCACTGGAGGGCAAGAATAGTTCTTATGGTCAAAAGAAGAGAACCGAGGAGCCAGCACCACCTCGGGGCAAGAAAGCAGAATTTTTAGTCAAATTGGACCACGAAGGAGTTACATCTCCAAAGACTAAAAACAGTAAGGCTCTCCTGTTGCTGGGGGCCTCAGGATTTGGCTCCAATGGGGTGGGTGGTTTGCCCAGGGCAGAGGCTTACTCACACCCAGTTCTACTGGTCAAGGACAACAGAAAAGGAGACGGCTCCCGAGCAGAGCTTCTTTTGAAAGGGACAGCAGTCCAGAGGAAGCCCTCACCATCAATGCGCATGAGCGAGTATGGAGACTTGAACCTTGGCTGCCACAGGGACTGCCACAGCTCTTACTCAGACAtggatgaggaagaggaagaagtaGAAAGGAGGTCGGGCCGTGCTGCACTTGCTCCAGCCTCTGGAGGTTTGAGAACAGCCGGTCGTTTTCTCTCACGCATCTCAGTCTCCTCATCTTCCTCAGGTTCATCCAGCTCTTCCAGCTCAGGCTCTCTCTCGAGTTCCAGTCTGTGCTCTTCTGAAAATGACTCATCTTACAGCTCGGAGGACGAGGAAAGCTCCACACTGTTGCTCCAAAGCTGCTTGACCCCCCACCATTCTTTGCTCCAGACCCCTGAACCCCCCGTGGGACCCCCACGGCACTCCTTTGTGGCCAAAGCTGTGGCAGTGTCCAGTGCCAAAGGTGGGCATAGCAACCACAGTACTAACAGCAAGCCACAAAAGAGGAAAGAGTATTCCAATTCGCTCTCCAAAACCTCTAAAGATCTGGTTAAGAGGCAACGGCTTCTTTCAGACCAGACCAAACCCAGAGTGTCATCCATCCTGCCATCTAGACAGCTGTGGAGGTGGTCAGGAAACCCCACGCAACGGCGTGGACTGAAGGGAAAGGCCCGGAAGCTTTTCTACAAGGCCATAGTGCGTGGCAAGGACGTGGTGCGGGTAGGAGACTGCGCTGTGTTCCTTTCGACTGGGCAGCCTCATCTGCCATTAATCGGCCGCATTGAGAGTTTCTGGGAATCATGGCAGAGCAGCATGGTCGTGAAGGTCCAGTGGTTCTACCACCCCGAGGAGACAAAGCTAGGCAAGAGACATCGTGATGGCAAGCATGCTTTGTACCAGTCTTGCCATGAAGATGAAAACGACGTCCAGACAATCTCTCATAAGTGTCAGGTGGTCACACGGGAGGAATACGAGCGTTTGACCCACAACAGGAAGTCTGATGGGAGCTATCATGACCTGTACTACCTGGCCGGCACTTACGACCCCACCAGTGGCCAGCTACTCACTGCAGACGGGATGTCCATACTTTGTTAGCACTGGACTTGCATGCCTGCGTATACTACTGAGTTGTCTTTGGTCCAAGTCAGAGATGTTGCACTGCAAATAAAAGGCTGGACTCTCTGAGGAGCAGGAAATAGAGTACCACCCTCATACCTACAAACTCGGCCTACTCTGGGGAGATATGCGCATGCTCCTCCTAGCGATACCTTACAGTACAGTAGATGCAGTTTGTCCATGGTCCTAATTCTCTTCAGAGGTTTTCTAATGGACATCTTGTGGATCTAATTTTGTATGAACCATTACCTGATCTTAGATCACCAAAGCAAAACTCTTGGTTTGGAGAACATGGCGGATGTTTATGAAGACTTGAGCCGTGTTGTAGGCAGTGGCGGTGTGGAGTGATCTCCGCACGTTACTTTCATGATTCCAGGGATATTTAAGTACGTATagatctaaatatatattaagttcatttatgtatatatagggAAATATTTCCTATCAAGCCATACACTTCAGTACCTCTTAACATGTCTTTTTATTCAGGTGTATATTGTACAGGACAGGTTgctggtgtttttttgtgtgtgtgtgttttctttgttgttgtctatatgtaaatattctaaGCTATTTTATATAAGTGTAATGTACAGAGGCTTATCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36067 lncRNA upstream 6 28868794 ~ 28869074 (+) True G24176
TU36066 lncRNA upstream 1044 28867616 ~ 28868036 (+) True G24175
TU36065 lncRNA upstream 4221 28864644 ~ 28864859 (+) True G24174
TU36063 lncRNA upstream 6578 28862273 ~ 28862502 (+) True G24172
TU36061 lncRNA upstream 9944 28858885 ~ 28859136 (+) True G24170
TU36193 lncRNA downstream 35431 28968515 ~ 29014908 (+) True G24267
TU36194 lncRNA downstream 53053 28986137 ~ 28986430 (+) True G24268
TU36196 lncRNA downstream 76398 29009482 ~ 29018503 (+) True G24270
TU36200 lncRNA downstream 119348 29052432 ~ 29054413 (+) False LOC122341401
TU36201 lncRNA downstream 119348 29052432 ~ 29054413 (+) False LOC122341401
XM_043233373.1 mRNA upstream 22705 28843814 ~ 28846375 (+) False LOC122335482
XM_043233380.1 mRNA upstream 22705 28843820 ~ 28846375 (+) False LOC122335482
XM_043233367.1 mRNA upstream 22705 28843825 ~ 28846375 (+) True LOC122335482
XM_043232741.1 mRNA upstream 38344 28826613 ~ 28830736 (+) True otop2
XM_043232840.1 mRNA upstream 50978 28816578 ~ 28818102 (+) True amn
XM_043232808.1 mRNA downstream 24573 28957657 ~ 28962542 (+) True fscn2a
XM_043234732.1 mRNA downstream 115194 29048278 ~ 29054414 (+) True LOC122341401
XM_043233246.1 mRNA downstream 127691 29060775 ~ 29073746 (+) True LOC122335397
XM_043232698.1 mRNA downstream 282043 29215127 ~ 29225079 (+) True LOC122334787
XM_043232703.1 mRNA downstream 282043 29215127 ~ 29225079 (+) False LOC122334787
TU36055 other upstream 22788 28843841 ~ 28846292 (+) False LOC122335482
TU36019 other upstream 160481 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 221988 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 308756 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1586674 27281849 ~ 27282406 (+) False LOC122335546
TU36269 other downstream 295669 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 458834 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 506865 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 566439 29499523 ~ 29500119 (+) True G24436

Expression Profile