RNA id: TU36200


Basic Information

Item Value
RNA id TU36200
length 942
lncRNA type sense_over
GC content 0.39
exon number 4
gene id LOC122341401
representative False

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29048278 ~ 29054414 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAAGAAAGACAGTTTATGAAAAAGCTGTGACAAAAAGACGTCTAGAGCAGGAAAGAGCTAAAACCCGAGTTAACATCGGAGTTGCTTTTCCACGCTGGAGACAACTGCGAGAGTCAAAGTGTCTGAAAACAGATGCCATGGTTGCACTTTTTCTTCTGGACAGTTACGAGAAAAGTACAACATCCACATTTTTGGAGCATGATTTCATAAAGCCACCGCCACCAGAGTCTTCCTACGAAGAGTCTGAAATCAAGTTTCTCGtcaaggaggaagaggaggagaaaccTGCCTGTAAAAATTGAGAGTTTATGATGAGAGCGAGAAGGATACTTTTGTTGGTGCTCGGACAACAGCATCTCTGGGATTCAGCCGTGTGTCTGTGAAGAGCAACAGATATTCCCCCTGATCTCAGTGAACTCTGACTCTCTGTTCACGTTGAGGATCAACGAGTGCTTCTCAAAGGTCCAGATCAGCAGAAGAAGTGGGTAGATGGTGAAAGGAAGGACTCTGGCCTGAAACAACCGTGTTGCCACCTCCATTGAGACTGGATTTCAActgacaaaatgattaaatctaCTATATATTCTGCTCAGGAGAGTTTTTCAATCTGTCAGTTTTAATACGGTACTCATGATTGTTCATGTCTTTCATCAAGTTATTAATGCTACAGTATGATACTCATGTAAACATTCTTGCAGATTGTGGGAGAGTTTTCTTTATGTATTGATGGTGGTTAATAATTCACTTGTTTTACAACAATAGTCCAGTCTTTTTGAAGagttttctaaatgtaataGTTACATGTAACAGCAAATACACAACACTTTGGATTCATCTCAATCTTTATGTATAAAGAAGAAACTACTGTCTTGTAGCAAAAATGTAACTTGTGGCATTTAGCAATAGCCTAAtggacatatttattaaaacatgttatCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36196 lncRNA upstream 33929 29009482 ~ 29018503 (+) True G24270
TU36193 lncRNA upstream 37524 28968515 ~ 29014908 (+) True G24267
TU36194 lncRNA upstream 66002 28986137 ~ 28986430 (+) True G24268
TU36071 lncRNA upstream 178144 28869160 ~ 28874288 (+) False LOC122334478
TU36067 lncRNA upstream 183358 28868794 ~ 28869074 (+) True G24176
TU36202 lncRNA downstream 6396 29060809 ~ 29073755 (+) False LOC122335397
TU36205 lncRNA downstream 66333 29120746 ~ 29126066 (+) True G24278
TU36214 lncRNA downstream 76750 29131163 ~ 29141577 (+) True G24286
TU36257 lncRNA downstream 140677 29195090 ~ 29202861 (+) False G24317
TU36258 lncRNA downstream 140677 29195090 ~ 29202861 (+) False G24317
XM_043232808.1 mRNA upstream 89890 28957657 ~ 28962542 (+) True fscn2a
XM_043232452.1 mRNA upstream 119348 28869765 ~ 28933084 (+) False LOC122334478
XM_043233246.1 mRNA downstream 6362 29060775 ~ 29073746 (+) True LOC122335397
XM_043232698.1 mRNA downstream 160714 29215127 ~ 29225079 (+) True LOC122334787
XM_043232703.1 mRNA downstream 160714 29215127 ~ 29225079 (+) False LOC122334787
XM_043232700.1 mRNA downstream 160714 29215127 ~ 29225056 (+) False LOC122334787
XM_043233410.1 mRNA downstream 170579 29224992 ~ 29228086 (+) True LOC122335520
TU36055 other upstream 206140 28843841 ~ 28846292 (+) False LOC122335482
TU36019 other upstream 343833 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 405340 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 492108 28515643 ~ 28560324 (+) True G24115
TU35581 other upstream 1770026 27281849 ~ 27282406 (+) False LOC122335546
TU36269 other downstream 174340 29228753 ~ 29230230 (+) False cenpx
TU36401 other downstream 337505 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 385536 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 445110 29499523 ~ 29500119 (+) True G24436

Expression Profile