RNA id: TU36395


Basic Information

Item Value
RNA id TU36395
length 218
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G24406
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29363551 ~ 29363768 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

AAAGGAAGCagtacattttcattcttttgcttGGGTggaacaaattatattttgcttagTTGGAGCAGCAGCTGTGTCGTGGTCATCCCAAAGCCTCCTCATGGAGACTGGCCTGTCATTCATAACCAACAAGGGTCCCATATCCCTCAGATGATTAAACTGCTGGACTGGGAGGACGACACAGACCACTGAATCATGGTCATGGAGCTGCACATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU36376 lncRNA upstream 14899 29347735 ~ 29348652 (+) True G24398
TU36374 lncRNA upstream 14899 29347782 ~ 29348652 (+) False G24398
TU36355 lncRNA upstream 44954 29312729 ~ 29318597 (+) True G24386
TU36353 lncRNA upstream 57603 29305662 ~ 29305948 (+) False LOC122335232
TU36347 lncRNA upstream 64503 29298810 ~ 29299048 (+) False LOC122335232
XR_006248986.1 lncRNA downstream 28150 29391918 ~ 29393838 (+) False LOC122335632
TU36404 lncRNA downstream 28150 29391918 ~ 29401266 (+) True LOC122335632
XR_006248987.1 lncRNA downstream 28160 29391928 ~ 29402603 (+) False LOC122335632
TU36433 lncRNA downstream 136750 29500518 ~ 29501330 (+) True G24438
XR_006248994.1 lncRNA downstream 362426 29726194 ~ 29746875 (+) True LOC122335675
XM_043233202.1 mRNA upstream 38631 29321348 ~ 29324920 (+) False LOC122335371
XM_043233212.1 mRNA upstream 38631 29321514 ~ 29324920 (+) True LOC122335371
XM_043233049.1 mRNA upstream 57311 29298708 ~ 29306240 (+) True LOC122335232
XM_043233102.1 mRNA upstream 72107 29288138 ~ 29291444 (+) True pycr1a
XM_043233117.1 mRNA upstream 76369 29284692 ~ 29287182 (+) True LOC122335289
XM_043233404.1 mRNA downstream 76187 29439955 ~ 29442973 (+) True LOC122335508
XM_043232687.1 mRNA downstream 327539 29691307 ~ 29725107 (+) True LOC122334720
XM_043232684.1 mRNA downstream 410117 29773885 ~ 29785104 (+) False LOC122334671
XM_043232683.1 mRNA downstream 410392 29774160 ~ 29785104 (+) True LOC122334671
XM_043232685.1 mRNA downstream 410392 29774160 ~ 29785104 (+) False LOC122334671
TU36269 other upstream 133321 29228753 ~ 29230230 (+) False cenpx
TU36055 other upstream 517259 28843841 ~ 28846292 (+) False LOC122335482
TU36019 other upstream 654952 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 716459 28592815 ~ 28647092 (+) False LOC122334878
TU35969 other upstream 803227 28515643 ~ 28560324 (+) True G24115
TU36401 other downstream 28150 29391918 ~ 29401266 (+) False LOC122335632
TU36421 other downstream 76181 29439949 ~ 29442655 (+) False LOC122335508
TU36431 other downstream 135755 29499523 ~ 29500119 (+) True G24436

Expression Profile