RNA id: XM_043233404.1


Basic Information

Item Value
RNA id XM_043233404.1
length 785
RNA type mRNA
GC content 0.50
exon number 3
gene id LOC122335508
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 29439949 ~ 29442973 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGTAAGAACCCTCTTCCTTCAGCCTGGAGACATCTGGAGAAATAACGATGGAATCATTTGCTTAAATGTGTCTAAACGCACAGGGCTTCAGAAGACCTAAATCAGAGCAGCTCAATGAATCCTCAGAGGGATTTCAGCGCTGATGAAGATGAACTTTGGGACAGTGGTGATCTCTGCGGGTCTGTGCGGTCTGCTCAGCTTCATCCTGCTCGCCGTGTCCATCGCCACTGAATACTGGTACATTATAGAAGTGGATGATGAGAAGAACTCCAGCCTGGACTACAGCAGCTCTCACTCCGGACTCTGGAGGATATATGAAGGACCGAACGGCAGTTATCATGACATCTCGTTCTACACGGACTCGTCCGAACACACCGAGCAGGAGAAGCACCTTTTGAACTTGCACAGGGTCATCGTGGTCCTGCTGCCTCTCAGTCTGGTGCTGCTGGTCTTTGGTGGGATCTTCGGTCTGGTGGCGTCTTTGGCTCAGAGCTGCACTCTTCTCACCTGCATCGCTGCATACTTCTTCATCTGCAGTGAGTGCCATTAACAGCTACACACGGTTCAGCGGTTCAGTCTACACACAATTAAGCGATTGTTGCGTAGAGGTCAGTGAGACAGAGCGGCTCAGACAATGTCACACGTCCATATAAAACACAACGGGAAAGAAAGTAAATGTCAGACTCTCCAGCTGAGCGCAGCTGTCAGGTGATCTGGACACACAGCGAGGGGGGTTTAATAGATTTGGAGGTTTTTAGCTCAATAATACATATCCACAAAGCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006248987.1 lncRNA upstream 37352 29391928 ~ 29402603 (+) False LOC122335632
TU36404 lncRNA upstream 38689 29391918 ~ 29401266 (+) True LOC122335632
XR_006248986.1 lncRNA upstream 46117 29391918 ~ 29393838 (+) False LOC122335632
TU36395 lncRNA upstream 76187 29363551 ~ 29363768 (+) True G24406
TU36376 lncRNA upstream 91303 29347735 ~ 29348652 (+) True G24398
TU36433 lncRNA downstream 57545 29500518 ~ 29501330 (+) True G24438
XR_006248994.1 lncRNA downstream 283221 29726194 ~ 29746875 (+) True LOC122335675
TU36461 lncRNA downstream 371646 29814619 ~ 29815647 (+) True G24464
XR_006248675.1 lncRNA downstream 478562 29921535 ~ 29922299 (+) True LOC122333787
XR_006250524.1 lncRNA downstream 480192 29923165 ~ 29924120 (+) True LOC122342119
XM_043233202.1 mRNA upstream 115035 29321348 ~ 29324920 (+) False LOC122335371
XM_043233212.1 mRNA upstream 115035 29321514 ~ 29324920 (+) True LOC122335371
XM_043233049.1 mRNA upstream 133715 29298708 ~ 29306240 (+) True LOC122335232
XM_043233102.1 mRNA upstream 148511 29288138 ~ 29291444 (+) True pycr1a
XM_043233117.1 mRNA upstream 152773 29284692 ~ 29287182 (+) True LOC122335289
XM_043232687.1 mRNA downstream 248334 29691307 ~ 29725107 (+) True LOC122334720
XM_043232684.1 mRNA downstream 330912 29773885 ~ 29785104 (+) False LOC122334671
XM_043232683.1 mRNA downstream 331187 29774160 ~ 29785104 (+) True LOC122334671
XM_043232685.1 mRNA downstream 331187 29774160 ~ 29785104 (+) False LOC122334671
XM_043234738.1 mRNA downstream 473280 29916253 ~ 29921491 (+) True LOC122341412
TU36401 other upstream 38689 29391918 ~ 29401266 (+) False LOC122335632
TU36269 other upstream 209725 29228753 ~ 29230230 (+) False cenpx
TU36055 other upstream 593663 28843841 ~ 28846292 (+) False LOC122335482
TU36019 other upstream 731356 28707313 ~ 28708599 (+) False LOC122341395
XR_006248835.1 other upstream 792863 28592815 ~ 28647092 (+) False LOC122334878
TU36431 other downstream 56550 29499523 ~ 29500119 (+) True G24436

Expression Profile