RNA id: XM_043225518.1


Basic Information

Item Value
RNA id XM_043225518.1
length 2809
RNA type mRNA
GC content 0.45
exon number 2
gene id hs3st3b1a
representative True

Chromosome Information

Item Value
chromosome id NC_056701.1
NCBI id CM032070.1
chromosome length 30200998
location 7362916 ~ 7374464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCATTATTCTGATTTGAATgtgtaatatttgaatattagtTTTGAATATTAGTagtgttatcattttaaaaatgtgccgAAACTACATAGTGTTTTTCAGGTTGCGGGGTATGTATGACAAAAGTGTTTGTGAGTTTTGAAAAATTCTGTAATTCCATGCATTTGTctgaaagcaataaaaatattggTTAGGTATTGAACAGCAACTGGGGGGGGGGATTATTAAAAAAGGATTAATCAAAAAATTGGGCACGAATTCGGATTGGCCAATTCGGCTGCCAATCACACGCCCCTCTTCTTTAAATCCCATTCGCGGCCCGCGGTTCACTCAGACGACGAGAACCAGTGGGAGGCGACGGAGAGATGCGCAAAGACGCGCTCGTGCCGCTGTAACAACGGTGACTTCCCAAATCTCCGCTAGACCCCAACATGAAATGAATTCAACATCTGCCGGGGACGCGCGCTCCTTTTTCCCTCTCCCGCGGAGATGCCTGCACGTTACAGGGACCTATGCGGAGGAGCAAGTAACTTTGCCAATATGCCCTATTGGACATTGACATTAAACACAGGAGAGTCCTATGGAATATAGTCCGCACTGTCACTCCACTCAGCCGGCGAAAAACAAACTTTTCGTGTTCTGCATCATGCTGTCACTGTGGGTGTACATGCTGTACTGCTGCGTGGGCTACTGCTCCACCACACCGAGCTTCATGATCGAAGAAAGAAGCGGTAGGAATCCGCTCAGACCCGTCCAGAATCAAGACCCGGAGGTGTTCCTCAAAAGCCAGTCCAGGGACTTGCTAACCAACGAGAGTGATGCTGACAGCAAAGGAGACGGCTGGGAGGAAAATAGGGGCGAGGTGGCTTACGACGAGGACTCGGGAGTAGCAGGTGCCCTGAACGGCTCCGAGACCAAAAAGTTGCCCCAAGCGATCATAATAGGGGTGAAGAAGGGCGGGACGCGCGCGCTGCTCGAGTTTCTGCGCCTCCATCCCGACGTCCGCGCGGTGGGAGCGGAGCCGCACTTTTTTGATCGCAACTACGAGAAAGGACTCGAGTGGTACAGGGAACTAATGCCCAAAACTCAGGAGGGTCAGCTGACCATGGAGAAGACGCCAAGCTACTTTGTAACCAAGGAGGTCCCAGGCCGGATCCACGCCATGTCCAAGGACACTAAGCTGATAGTTGTGGTTAGAGACCCAGTAACCCGGGCGATCTCGGACTACACGCAGACCCGCTCAAAGAAACCCGACATCCCGTCCTTTGAGAGCttgactttcaaaaacatctcgGCCAATCTGATAGACTCCTCGTGGAGCGCGGTGCAGATCGGGATGTACGCCAGGCACCTGGAGCGGTGGCTGCAGTTCTTCCCAATGAACCAGCTGCTGTTCGTGAGCGGGGAGCGTCTGATCAGCGACCCGGCCGGGGAGATGGCCCGCGTACAGCACTTCCTGGGCCTGAGGAGGGAGGTCACGCACAAACACTTTCACTTTAACCCCGCCAAGGGCTTCCCTTGCCTCAAAAGAGCCGAAAGCAACAGCAAACCGCACTGCCTCGGCAAAACGAAAGGCCGCACGCATCCCAACATCCATCCCGGCGTGATTCAAAGACTGAGAGAGTTTTACAAGCCATTTAACAAAAAGTTTTACCACATGACCGGCCATGACTTCGGCTGGGACTGattttttcgttttttgtttcgttttgggAAATAATTCATTGTAAAAAGTATAGACctctattttataataatttattgaaaataatatactCACTCGGCTGCCTATCTGTTGTTGTACGTACTGCGAGTTTCTACTTTTTACATTCCGGTCGGATCTGTAAGCTTGACGTTTTGTCTTTtctaatgaggaaaaaaaaaattgtttgatgTAGGAATTTAGGGGGTGTCTGACAAAGGAAAATAGCACAATTAAACTAATTACGGGTAAATGATGAGTCGTTCATAACAGGCCCTAATTTTTGCTTTAGTAAACATTatctgctgttttatttttgaggaTTCCAGCATGCCGtccttcattttaaatttagtctCAGCTGTTCCAAAGCCACATTTTGTGGATCAATACTCATAAAGCTGGACAAACCGTCAATcgtggcagaaaaaaaaatgaggttCGGGACACCAGCTGTTTAACTCTGTTAAGGAAAAGGTCATTTTCTACATCAGCGTTATATGGGAAGTCTGCGAGGAGGAATTTTTTAACTGTGTTTGATTCTCTGTTACAAAAGTCTGAGACTGTATTTATGATTCTCAAGATGAGAATGGCAACGCAATGCAGCTGGATAGAAATGTCCACCCGTGACTTCATGTTGCTGTAAGATTTTGCATGAAACTTGTCATGATacgtttttctttaaaaaaaaaaaaagggccttttcagtatgaatatgaaatgaagATCAGTTAACTCATTTCATACCTTACAGGAATTGCAAAAGGGGAAGGTGAAATTTCCCTAGTcatgattatttttcataaatcagTGGTTGAGTTTTATTCAGCCTTTTATTATGTGCTTtcaaatgctgttgtttttataacGGACCCGATGAAAATGAGCTCAAAATGATTGTGCGCTTGTTTTTTTCCAACTTCGAACCAAACAGTCCTGTCAGAGGTATTTCTGTGCTGTGaagaaataaatctatttttaccAGAGAGTAACACGTCGTATATTCTAGTGTTTATTGATCTGTGTAGCATGAAAAGCAGGACAATTGTTTTCTACActgataataatgagaaatggttcttgagcagcaaatcagcatattataatg

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K07809 HS3ST3; [heparan sulfate]-glucosamine 3-sulfotransferase 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26584 lncRNA upstream 48764 7310174 ~ 7314152 (+) True G17808
TU26582 lncRNA upstream 79970 7265343 ~ 7282946 (+) True G17806
TU26565 lncRNA upstream 96194 7194782 ~ 7266722 (+) True G17791
TU26448 lncRNA upstream 386651 6922196 ~ 6976265 (+) True G17704
TU26442 lncRNA upstream 459755 6902746 ~ 6903161 (+) True G17699
TU26660 lncRNA downstream 18127 7392591 ~ 7392872 (+) True G17861
TU26661 lncRNA downstream 23775 7398239 ~ 7398465 (+) True G17862
TU26666 lncRNA downstream 34774 7409238 ~ 7409540 (+) True G17867
TU26695 lncRNA downstream 211009 7585473 ~ 7591526 (+) False LOC122331592
TU26696 lncRNA downstream 211009 7585473 ~ 7591526 (+) True LOC122331592
XM_043234879.1 mRNA upstream 62183 7294957 ~ 7300733 (+) True LOC122341489
XM_043228323.1 mRNA upstream 81880 7270950 ~ 7281036 (+) True slc16a5b
XM_043228332.1 mRNA upstream 81880 7270990 ~ 7281036 (+) False slc16a5b
XM_043228315.1 mRNA upstream 81880 7271007 ~ 7281036 (+) False slc16a5b
XM_043235263.1 mRNA upstream 110993 7241697 ~ 7251923 (+) True metrnla
XM_043229148.1 mRNA downstream 208890 7583354 ~ 7585598 (+) False LOC122331592
XM_043228545.1 mRNA downstream 245186 7619650 ~ 7648946 (+) True ttyh2l
XM_043229085.1 mRNA downstream 275165 7649629 ~ 7655190 (+) True chmp6a
XM_043235702.1 mRNA downstream 281567 7656031 ~ 7719941 (+) False baiap2a
XM_043235706.1 mRNA downstream 281568 7656032 ~ 7725519 (+) True baiap2a
TU26266 other upstream 806166 6504915 ~ 6556750 (+) False G17590
TU26270 other upstream 806166 6504915 ~ 6556750 (+) True G17590
TU26037 other upstream 1167894 6192740 ~ 6195022 (+) False LOC122341437
XR_006250506.1 other downstream 281568 7656032 ~ 7725519 (+) False baiap2a
unassigned_transcript_276 other downstream 575297 7949761 ~ 7950417 (+) True LOC122331768
TU26829 other downstream 575340 7949804 ~ 7950310 (+) False LOC122331768
TU26831 other downstream 576390 7950854 ~ 7951364 (+) True G17985
TU26833 other downstream 585607 7960071 ~ 7962295 (+) False LOC122341279

Expression Profile